ViewGene

Locus Name:
GeneID:
Location:

GeneID:4730
TrivialName: PA14_48750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48750
PAO1 Ortholog Locus:PA1203
Sequence Length:408
Protein Length:135
Start: 4334892
Stop: 4334485
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04592.1|AE004550_8 (AE004550) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/135 (99%), Positives = 134/135 (99%)
Sequence:
ATGGCTACCCAGGTCGTCAACGCTTCCCTCGGCGCCACCCCTTACCGCGTGACCCTCGGCGACGACAGCCAC
CAGTGGCTGAGCGACGTGCCGGCCGCCCTCGGCGGCGGCGACAGCGGTCCCTCGCCGCACGAGATCCTGCTC
TCGGCGCTGGGCGCCTGCACGGCGATCACCGTGGCGATGTACGCGCAGCGCAAGGAGTGGCCGCTGGAAGGC
ATCGACGTGCAACTGAACATCGTCGAGGAACGCACCAAGCCGGAGCCCTTCACCCATATCCGCCGCGACATC
CGCTTGGCCGGCGATCTCGATGCCGAGCAGCGCCAGCGCCTGCTGGAGATCGCCAATGCCTGCCCGATCCAT
CGTGTACTCTCCGGAGAGGTCAGCGTCAGCAGCCAACTGCGCGACTGA
Translation:
MATQVVNASLGATPYRVTLGDDSHQWLSDVPAALGGGDSGPSPHEILLSALGACTAITVAMYAQRKEWPLEG
IDVQLNIVEERTKPEPFTHIRRDIRLAGDLDAEQRQRLLEIANACPIHRVLSGEVSVSSQLRD*
AnnotationID:4735GeneID:4730
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 19:07:33
Gene Name:
Confidence Code:3
GeneProduct:putative redox protein
Cell Localization:()
Synonyms:PA1203
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1765,pfam02566
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG1765, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 137 residues,  94.9% aligned
Score =  112 bits (281), Expect = 3e-26
Identities = 44/130 (33%), Positives = 69/130 (53%), Gaps = 2/130 (1%)

pfam02566, OsmC, OsmC-like protein. 
CD-Length = 133 residues,  87.2% aligned
Score =  103 bits (259), Expect = 1e-23
Identities = 38/116 (32%), Positives = 63/116 (54%), Gaps = 2/116 (1%)
 
Genomic Context:
Comment:
ReferenceID:9461
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26601
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36491
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4730_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4730

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7100 PA1203_tr translation of PA1203 135 99.25 99.25 0 689.0
186947 gb|AAG04592.1|AE004550_8 (AE004550) hypothetical protein PA1203 [Pseudomonas aeruginosa PAO1] 135 99.25 99.25 0 689.0
186948 gb|AAM41988.1| (AE012384) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913] 147 43.53 59.18 15 319.0
186949 gb|AAM37724.1| (AE011929) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306] 147 42.85 58.50 15 311.0
186950 emb|CAE27171.1| (BX572598) possible hydrolase [Rhodopseudomonas palustris CGA009] 409 14.18 21.27 276 271.0
GC ORFID: 47732How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1203Glimmer Score:
Start: 619016Stop: 619423
Length: 408
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1203 translation of PA1203Homolog Bit Score 270.0
Other Homologs: t_PA1203 (ORF: GLIMMER)
GC ORF Sequence
ATGGCTACCCAGGTCGTCAACGCTTCCCTCGGCGCCACCCCTTACCGCGTGACCCTCGGCGACGACAGCCAC
CAGTGGCTGAGCGACGTGCCGGCCGCCCTCGGCGGCGGCGACAGCGGTCCCTCGCCGCACGAGATCCTGCTC
TCGGCGCTGGGCGCCTGCACGGCGATCACCGTGGCGATGTACGCGCAGCGCAAGGAGTGGCCGCTGGAAGGC
ATCGACGTGCAACTGAACATCGTCGAGGAACGCACCAAGCCGGAGCCCTTCACCCATATCCGCCGCGACATC
CGCTTGGCCGGCGATCTCGATGCCGAGCAGCGCCAGCGCCTGCTGGAGATCGCCAATGCCTGCCCGATCCAT
CGTGTACTCTCCGGAGAGGTCAGCGTCAGCAGCCAACTGCGCGACTGA