ViewGene

Locus Name:
GeneID:
Location:

GeneID:473
TrivialName: PA14_66170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66170
PAO1 Ortholog Locus:PA5005
Sequence Length:1758
Protein Length:585
Start: 5896194
Stop: 5894437
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08390.1|AE004913_5 (AE004913) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1]
Identities = 584/585 (99%), Positives = 584/585 (99%)
Sequence:
GTGGCATTGACCGTCCTAGGCCTGTCTGGCGCCGTAAGCCATGACCCGTCCGCCGCCCTGTACATCGACGGC
AAGCTGGTCGCGGCCGTCGAGGAAGAGCGCTTCGTGCGTGACAAGCACGCGAAGAACCGCATGCCCTACGAA
TCGGCGAAGTTCTGCCTGGAGCAGGCAGGGATCGAGCCGGCCGATGTCGACGTGGTGGCGATTCCCTTCGCT
CCCATCAGCATCATGGAAAAGGCCCGCTGGCACTACGCCAAGCGCTACGCCTACGCGCCGGATCGCGCGCTG
GATGCGATCCTGCTCGGCAACCGCCGCTACAAGCGTTACTACAAGCGCATCGAGTGGTGCCTGCAGCAACTC
GGCTTCGACCTGAAGAAAATCAAGATCCAGCCGGTCGAGCACCACCTTGCCCATGCCTCCAGCGCCTACCAT
TGCTCGGGGTTCAAGGAAAAGACCGCGATCCTCGGCATCGACGGCAAGGGCGAGTACGCCACCACTTTCTTC
GGCTGGGGCGAGAACGGTCGGATCCACAAGATCAAGGAGTTCTACGATCCGGATTCGCTGGGCGGCCTGTAC
GGCGCGATCACCGAGTACCTCGGCTTCGACATGCTCGACGGCGAGTTCAAGGTCATGGGCATGGCGCCCTAC
GGTGACGCCAGCAAGTACGATTTCTCCCGTCTCGCCAAGTTCGAGAACGGCGAACTGGTGATCAACACCGAC
TATGCCAACGTCATCGGCTTCCGCCGCTACAAGGAGAAAGGCAAGGGCTACTACTTCTCGCCCAAGCTGATC
GAGTGGCTGGGGCCCAAGCGCGAAGGCGATATCGCCGACGATCCCTACATCCATTACGCCGCGAGCATCCAG
GCGCTGTTCGAGAAGCTCGCGCTGGAGATGATGGACTACTACCTCGGCGATATCATCCGCGAGACCGGCAAG
GTCGCTTTCGCCGGCGGCTGCGCGCTGAACGTCAAGCTCAACCAGAAGATCATCTCGCGCCCCGAAGTGAAG
GAGCTGTTCGTCCAGCCGGCGGCCAGCGATGCCGGCACCGCGGTCGGCGCGGCGGCCTACGTGTCGCACCAG
CGCGGCGTGCCGGTGGAGAAGATGGAGCACGTCTACCTCGGCCCGGAGTATTCCAACGAGGACGTCATCGCC
GCCTGCGCCCGTCACGAGGCCAGGCCGCAGTGGCAGAAGATCGACAACCGCAGCCGGCGTATCGGCAGGATC
CTTGCCGACGGCAACCCGGTGGCCTGGTTCCAGGGACGCATGGAGTTCGGTCCGCGTGCCCTCGGTGGCCGC
TCCATTCTCGGCTGCCCGAGCGTGCCGGGCGTGGCCGACCGGATCAATGCGCAGATCAAGTTCCGCGAGCGC
TGGCGACCCTTCTGCCCGTCGATGCTGGATACCGTCGGCCCGCAGATGTTCAAGATCGACCACCCGGCCCCG
TTCATGACCTTCACCTTCGAAGTCAACGAAGAGTGGAAGGAGCGAGTGCCGGAAGTGGTGCACGAGGACGGC
ACCTCCCGCGCCCAGGTGCTGAAGCGCGAGTACAACCCGCGCTACTACGACCTGATGAAGGAACTGGAGAAC
CTCACCGGCAACGGCGTGGCCCTGAACACTTCGCTCAATCGTCGTGGCGAACCGATGATCTGCTCGCCGACC
GACGCCCTGAACATGTTCTTCGGCTCCGATCTGCAGTACCTGATCATGGAGGACATCCTGGTCGTGAAGGAG
GGCGTGGACTGGTATGACTCGGTCGGCTGA
Translation:
MALTVLGLSGAVSHDPSAALYIDGKLVAAVEEERFVRDKHAKNRMPYESAKFCLEQAGIEPADVDVVAIPFA
PISIMEKARWHYAKRYAYAPDRALDAILLGNRRYKRYYKRIEWCLQQLGFDLKKIKIQPVEHHLAHASSAYH
CSGFKEKTAILGIDGKGEYATTFFGWGENGRIHKIKEFYDPDSLGGLYGAITEYLGFDMLDGEFKVMGMAPY
GDASKYDFSRLAKFENGELVINTDYANVIGFRRYKEKGKGYYFSPKLIEWLGPKREGDIADDPYIHYAASIQ
ALFEKLALEMMDYYLGDIIRETGKVAFAGGCALNVKLNQKIISRPEVKELFVQPAASDAGTAVGAAAYVSHQ
RGVPVEKMEHVYLGPEYSNEDVIAACARHEARPQWQKIDNRSRRIGRILADGNPVAWFQGRMEFGPRALGGR
SILGCPSVPGVADRINAQIKFRERWRPFCPSMLDTVGPQMFKIDHPAPFMTFTFEVNEEWKERVPEVVHEDG
TSRAQVLKREYNPRYYDLMKELENLTGNGVALNTSLNRRGEPMICSPTDALNMFFGSDLQYLIMEDILVVKE
GVDWYDSVG*
AnnotationID:482GeneID:473
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 09:09:57
Gene Name:
Confidence Code:3
GeneProduct:putative carbamoyltransferase
Cell Localization:()
Synonyms:PA5005
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2192,pfam02543
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN70511.1|AE016692_10 (AE016792) carbamoyltransferase, NodU family [Pseudomonas putida
           KT2440]
          Length = 585

 Score = 1072 bits (2773), Expect = 0.0
 Identities = 510/582 (87%), Positives = 553/582 (95%)

>gb|AAO58420.1| (AE016874) carbamoyltransferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 585

 Score = 1067 bits (2760), Expect = 0.0
 Identities = 507/585 (86%), Positives = 551/585 (94%)
Structural Features:
COG2192, Predicted_carbamoyl_transferase, 
Predicted carbamoyl transferase, NodU family 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 555 residues, 100.0% aligned
Score =  665 bits (1716), Expect = 0.0
Identities = 249/578 (43%), Positives = 328/578 (56%), Gaps = 26/578 (4%)

pfam02543, CmcH_NodU, Carbamoyltransferase.
CD-Length = 360 residues, 100.0% aligned
Score =  266 bits (682), Expect = 4e-72
Identities = 139/373 (37%), Positives = 193/373 (51%), Gaps = 16/373 (4%)
Genomic Context:
Comment:
ReferenceID:14141
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:18091
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:35058
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:473_cdd.html
URL:
Homologs By Global Alignment
Gene ID:473

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
820 PA5005_tr translation of PA5005 585 99.82 99.82 0 3101.0
34346 gb|AAG08390.1|AE004913_5 (AE004913) probable carbamoyl transferase [Pseudomonas aeruginosa PAO1] 585 99.65 99.82 0 3098.0
34347 gb|AAN70511.1|AE016692_10 (AE016792) carbamoyltransferase, NodU family [Pseudomonas putida KT2440] 585 87.00 94.52 0 2763.0
34348 gb|AAO58420.1| (AE016874) carbamoyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000] 585 86.49 94.18 0 2756.0
GC ORFID: 43475How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5005Glimmer Score:
Start: 5159877Stop: 5158120
Length: 1758
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5005 translation of PA5005Homolog Bit Score 1199.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3393 (ORF: BLASTX 1069.0), t_PA5005 (ORF: GLIMMER)
GC ORF Sequence
GTGGCATTGACCGTCCTAGGCCTGTCTGGCGCCGTAAGCCATGACCCGTCCGCCGCCCTGTACATCGACGGC
AAGCTGGTCGCGGCCGTCGAGGAAGAGCGCTTCGTGCGTGACAAGCACGCGAAGAACCGCATGCCCTACGAA
TCGGCGAAGTTCTGCCTGGAGCAGGCAGGGATCGAGCCGGCCGATGTCGACGTGGTGGCGATTCCCTTCGCT
CCCATCAGCATCATGGAAAAGGCCCGCTGGCACTACGCCAAGCGCTACGCCTACGCGCCGGATCGCGCGCTG
GATGCGATCCTGCTCGGCAACCGCCGCTACAAGCGTTACTACAAGCGCATCGAGTGGTGCCTGCAGCAACTC
GGCTTCGACCTGAAGAAAATCAAGATCCAGCCGGTCGAGCACCACCTTGCCCATGCCTCCAGCGCCTACCAT
TGCTCGGGGTTCAAGGAAAAGACCGCGATCCTCGGCATCGACGGCAAGGGCGAGTACGCCACCACTTTCTTC
GGCTGGGGCGAGAACGGTCGGATCCACAAGATCAAGGAGTTCTACGATCCGGATTCGCTGGGCGGCCTGTAC
GGCGCGATCACCGAGTACCTCGGCTTCGACATGCTCGACGGCGAGTTCAAGGTCATGGGCATGGCGCCCTAC
GGTGACGCCAGCAAGTACGATTTCTCCCGTCTCGCCAAGTTCGAGAACGGCGAACTGGTGATCAACACCGAC
TATGCCAACGTCATCGGCTTCCGCCGCTACAAGGAGAAAGGCAAGGGCTACTACTTCTCGCCCAAGCTGATC
GAGTGGCTGGGGCCCAAGCGCGAAGGCGATATCGCCGACGATCCCTACATCCATTACGCCGCGAGCATCCAG
GCGCTGTTCGAGAAGCTCGCGCTGGAGATGATGGACTACTACCTCGGCGATATCATCCGCGAGACCGGCAAG
GTCGCTTTCGCCGGCGGCTGCGCGCTGAACGTCAAGCTCAACCAGAAGATCATCTCGCGCCCCGAAGTGAAG
GAGCTGTTCGTCCAGCCGGCGGCCAGCGATGCCGGCACCGCGGTCGGCGCGGCGGCCTACGTGTCGCACCAG
CGCGGCGTGCCGGTGGAGAAGATGGAGCACGTCTACCTCGGCCCGGAGTATTCCAACGAGGACGTCATCGCC
GCCTGCGCCCGTCACGAGGCCAGGCCGCAGTGGCAGAAGATCGACAACCGCAGCCGGCGTATCGGCAGGATC
CTTGCCGACGGCAACCCGGTGGCCTGGTTCCAGGGACGCATGGAGTTCGGTCCGCGTGCCCTCGGTGGCCGC
TCCATTCTCGGCTGCCCGAGCGTGCCGGGCGTGGCCGACCGGATCAATGCGCAGATCAAGTTCCGCGAGCGC
TGGCGACCCTTCTGCCCGTCGATGCTGGATACCGTCGGCCCGCAGATGTTCAAGATCGACCACCCGGCCCCG
TTCATGACCTTCACCTTCGAAGTCAACGAAGAGTGGAAGGAGCGAGTGCCGGAAGTGGTGCACGAGGACGGC
ACCTCCCGCGCCCAGGTGCTGAAGCGCGAGTACAACCCGCGCTACTACGACCTGATGAAGGAACTGGAGAAC
CTCACCGGCAACGGCGTGGCCCTGAACACTTCGCTCAATCGTCGTGGCGAACCGATGATCTGCTCGCCGACC
GACGCCCTGAACATGTTCTTCGGCTCCGATCTGCAGTACCTGATCATGGAGGACATCCTGGTCGTGAAGGAG
GGCGTGGACTGGTATGACTCGGTCGGCTGA