ViewGene
Locus Name:
GeneID:
Location:

GeneID:4729
TrivialName: PA14_53830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53830
PAO1 Ortholog Locus:PA0806
Sequence Length:396
Protein Length:131
Start: 4773610
Stop: 4773215
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04195.1|AE004515_11 (AE004515) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 131/131 (100%)
Sequence:
ATGCCGTCGCCCGCTCGCACGCTGCTCGTGGCCTTCGTGTCCGCCTGGTTCCTGCTGGGTGGGCTGGGCCAT
TTCGTCTTCACCGATTTCTTCGTCGGCATCGTCCCGCCCTACGTGCCCTGGCCGCTGGCGGCGGTGTGGGTC
AGCGGGGTCTTCGAACTGCTCGGCGCCGCCGCCCTGCTGGTGCCGGCATGGCGCCGGCTGGCGGCGTGCGGG
CTGTTCATCCTGACCCTCTGCGTGACCCCGGCCAACCTCTACATGTGGCAGCACCCCGACCTGTTCCCATCC
TTCCCGCCGACGCTGCTGGCCGCTCGCCTGGCGCTGCAGGCGTTCCTCCTCGGCTGCATCCTGGCGCTGATG
CTGGCGCGGGACGAGGCGCCGCTGGCACGACGCTAG
Translation:
MPSPARTLLVAFVSAWFLLGGLGHFVFTDFFVGIVPPYVPWPLAAVWVSGVFELLGAAALLVPAWRRLAACG
LFILTLCVTPANLYMWQHPDLFPSFPPTLLAARLALQAFLLGCILALMLARDEAPLARR*
AnnotationID:4734GeneID:4729
AnnotatorUID: danlee
Modification Date/Time: 2004-04-16 17:05:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0806
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4270
Secondary Functional Category(ies):Membrane proteins
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4270, Predicted membrane protein [Function unknown].
     CD-Length = 131 residues, 100.0% aligned
     Score =  148 bits (375), Expect = 4e-37






   
Genomic Context:






   
Comment:


















    ReferenceID:9459




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26599




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4729
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7099
                           PA0806_tr
                           translation of PA0806
                           131
                           99.23
                           99.99
                           0
                           689.0
     

     
     
186946
                           gb|AAG04195.1|AE004515_11
                           (AE004515) hypothetical protein PA0806 [Pseudomonas aeruginosa PAO1]
                           131
                           99.23
                           99.99
                           0
                           689.0
     

     






      

          
GC ORFID: 47731How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0806Glimmer Score: 

          
Start: 180297Stop: 180692

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0806 translation of PA0806Homolog Bit Score 270.0

          
Other Homologs:  t_PA0806 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGTCGCCCGCTCGCACGCTGCTCGTGGCCTTCGTGTCCGCCTGGTTCCTGCTGGGTGGGCTGGGCCAT 
TTCGTCTTCACCGATTTCTTCGTCGGCATCGTCCCGCCCTACGTGCCCTGGCCGCTGGCGGCGGTGTGGGTC 
AGCGGGGTCTTCGAACTGCTCGGCGCCGCCGCCCTGCTGGTGCCGGCATGGCGCCGGCTGGCGGCGTGCGGG 
CTGTTCATCCTGACCCTCTGCGTGACCCCGGCCAACCTCTACATGTGGCAGCACCCCGACCTGTTCCCATCC 
TTCCCGCCGACGCTGCTGGCCGCTCGCCTGGCGCTGCAGGCGTTCCTCCTCGGCTGCATCCTGGCGCTGATG 
CTGGCGCGGGACGAGGCGCCGCTGGCACGACGCTAG