ViewGene
Locus Name:
GeneID:
Location:

GeneID:4727
TrivialName: PA14_67750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67750
PAO1 Ortholog Locus:PA5130
Sequence Length:420
Protein Length:139
Start: 6049972
Stop: 6049553
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08515.1|AE004926_5 (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
ATGCAATTCGTTTCCCGTCTGATCGAGTTCGCCACCAACCACTACCTGCTGGTCGCGGCGCTGCTGGTCCTG
CTGGTCCTGCTGTTGCTGCACGAGCTGCGCAAGGGCGGCAAGAGCCTGTCGACCCGCGAGCTGACCGCGCTG
GTCAATGCCGACCAGGCGGTGGTCCTGGATATCCGTCCGGCCAAGGAGTTCGCCAGCGGGCACATCGTCGAC
GCGCTGAACATCCCGGCCGACAAGCTGAACAGCCGCATGACCGAGCTGGAAAAGTACAAGGGCAAGACCATC
ATCCTGGTCGACGCCATGGGCCAGCACTCCGGTACCTGGGGCGGCGTCCTGAAGAAGGCCGGCTTCAACGCC
GCCAAGCTGTCCGGCGGGATCGGCAGCTGGCGCGGCGACAACCTGCCGCTGGTGAAGTGA
Translation:
MQFVSRLIEFATNHYLLVAALLVLLVLLLLHELRKGGKSLSTRELTALVNADQAVVLDIRPAKEFASGHIVD
ALNIPADKLNSRMTELEKYKGKTIILVDAMGQHSGTWGGVLKKAGFNAAKLSGGIGSWRGDNLPLVK*
AnnotationID:4732GeneID:4727
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 12:12:07
Gene Name:
Confidence Code:3
GeneProduct:putative rhodanese-like domain protein
Cell Localization:()
Synonyms:yigN
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0607,smart00450
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70620.1|AE016704_11 (AE016793) rhodanese domain protein [Pseudomonas putida KT2440]
          Length = 137

 Score =  185 bits (470), Expect = 3e-47
 Identities = 91/136 (66%), Positives = 118/136 (86%)

>gb|AAO58752.1| (AE016875) rhodanese-like domain protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 137

 Score =  180 bits (457), Expect = 1e-45
 Identities = 88/136 (64%), Positives = 108/136 (79%)

>gb|AAK38715.1|AF359453_1 (AF359453) hypothetical 15.6 kDa protein [Pseudomonas fluorescens]
          Length = 107

 Score =  146 bits (368), Expect = 2e-35
 Identities = 71/107 (66%), Positives = 88/107 (82%)








 
Structural Features:
COG0607, PspE, Rhodanese-related sulfurtransferase 
[Inorganic ion transport and metabolism]
CD-Length = 110 residues,  94.5% aligned
Score = 78.4 bits (192), Expect = 3e-16
Identities = 38/104 (36%), Positives = 55/104 (52%), Gaps = 2/104 (1%)

smart00450, RHOD, Rhodanese Homology Domain
CD-Length = 110 residues, 100.0% aligned
Score = 60.2 bits (145), Expect = 9e-11
Identities = 32/110 (29%), Positives = 48/110 (43%), Gaps = 13/110 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9455




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26595




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38069




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4727_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4727
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7097
                           PA5130_tr
                           translation of PA5130
                           139
                           99.99
                           99.99
                           0
                           694.0
     

     
     
186939
                           gb|AAG08515.1|AE004926_5
                           (AE004926) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           139
                           99.99
                           99.99
                           0
                           694.0
     

     
     
186940
                           gb|AAN70620.1|AE016704_11
                           (AE016793) rhodanese domain protein [Pseudomonas putida KT2440]
                           139
                           65.46
                           84.89
                           2
                           470.0
     

     
     
186941
                           gb|AAO58752.1|
                           (AE016875) rhodanese-like domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           139
                           63.30
                           77.69
                           2
                           457.0
     

     
     
186942
                           gb|AAK38715.1|AF359453_1
                           (AF359453) hypothetical 15.6 kDa protein [Pseudomonas fluorescens]
                           139
                           51.07
                           63.30
                           32
                           368.0
     

     






      

          
GC ORFID: 47729How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5130Glimmer Score: 

          
Start: 5313657Stop: 5313238

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5130 translation of PA5130Homolog Bit Score 271.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6493 (ORF: BLASTX 182.0), t_PA5130 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAATTCGTTTCCCGTCTGATCGAGTTCGCCACCAACCACTACCTGCTGGTCGCGGCGCTGCTGGTCCTG 
CTGGTCCTGCTGTTGCTGCACGAGCTGCGCAAGGGCGGCAAGAGCCTGTCGACCCGCGAGCTGACCGCGCTG 
GTCAATGCCGACCAGGCGGTGGTCCTGGATATCCGTCCGGCCAAGGAGTTCGCCAGCGGGCACATCGTCGAC 
GCGCTGAACATCCCGGCCGACAAGCTGAACAGCCGCATGACCGAGCTGGAAAAGTACAAGGGCAAGACCATC 
ATCCTGGTCGACGCCATGGGCCAGCACTCCGGTACCTGGGGCGGCGTCCTGAAGAAGGCCGGCTTCAACGCC 
GCCAAGCTGTCCGGCGGGATCGGCAGCTGGCGCGGCGACAACCTGCCGCTGGTGAAGTGA