ViewGene
Locus Name:
GeneID:
Location:

GeneID:4725
TrivialName: PA14_09920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09920
PAO1 Ortholog Locus:PA4173
Sequence Length:399
Protein Length:132
Start: 852977
Stop: 853375
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07560.1|AE004833_11 (AE004833) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/132 (100%), Positives = 132/132 (100%)
Sequence:
ATGACTGTACGCGACGTGGTTTTCCCCGCCGGCCGCCAGGCCCTCTACGAGCGCAACCGCTATTCCCCGGCG
GTCCGCAGCGACGGCCTGCTGTTCGTCTCCGGCCAGGTCGGCAGCCGCGACGACGGCTCTCCCGAACCCGAG
CTGGAGACCCAGGTCCGCCGCGCCTTCGACAATCTGAATGCGGTGCTCGCCGCGGCCGGTTGCGGGTTCGAC
GATGTGCTCGACGTCACCGTGTTCATGGTCGACGCCGAGGCCAACTTCGAGCGCATCTGGAAGATCGTCCCG
GAGTACTGGGGCGAGGCGCCGTACCCCACGCTGACGGCGGTGGGGGTGAACTGGCTGTATGGCTTCAGCTTC
GAGATCAAGGTGGTGGCGAGGTTGCCGGAGGGGCGGTGA
Translation:
MTVRDVVFPAGRQALYERNRYSPAVRSDGLLFVSGQVGSRDDGSPEPELETQVRRAFDNLNAVLAAAGCGFD
DVLDVTVFMVDAEANFERIWKIVPEYWGEAPYPTLTAVGVNWLYGFSFEIKVVARLPEGR*
AnnotationID:4730GeneID:4725
AnnotatorUID: diggins
Modification Date/Time: 2005-03-31 07:07:03
Gene Name:
Confidence Code:3
GeneProduct:putative translation initiation inhibitor
Cell Localization:()
Synonyms:PA4173
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0251,pfam01042
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0251, TdcF, Putative translation initiation inhibitor, yjgF family 
[Translation, ribosomal structure and biogenesis]
CD-Length = 130 residues,  96.9% aligned
Score =  104 bits (262), Expect = 3e-24
Identities = 48/127 (37%), Positives = 67/127 (52%), Gaps = 4/127 (3%)

pfam01042, Ribonuc_L-PSP, Endoribonuclease L-PSP. 
CD-Length = 120 residues,  98.3% aligned
Score = 95.7 bits (238), Expect = 2e-21
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 4/119 (3%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9451




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26591




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36696




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4725_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4725
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7095
                           PA4173_tr
                           translation of PA4173
                           132
                           99.99
                           99.99
                           0
                           692.0
     

     
     
186878
                           gb|AAG07560.1|AE004833_11
                           (AE004833) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           132
                           99.99
                           99.99
                           0
                           692.0
     

     
     
186880
                           emb|CAD44483.1|
                           (AJ297529) hypothetical protein [Pseudomonas stutzeri]
                           133
                           78.19
                           87.21
                           1
                           556.0
     

     
     
186879
                           emb|CAE30966.1|
                           (BX640438) conserved hypothetical protein [Bordetella bronchiseptica] [Bordetella bronchiseptica RB50]
                           134
                           74.62
                           88.80
                           2
                           558.0
     

     
     
186881
                           emb|CAE36050.1|
                           (BX640424) conserved hypothetical protein [Bordetella parapertussis]
                           134
                           73.88
                           88.80
                           2
                           554.0
     

     






      

          
GC ORFID: 47727How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4173Glimmer Score: 

          
Start: 4100960Stop: 4100562

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4173 translation of PA4173Homolog Bit Score 271.0

          
Other Homologs:  t_PA4173 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGTACGCGACGTGGTTTTCCCCGCCGGCCGCCAGGCCCTCTACGAGCGCAACCGCTATTCCCCGGCG 
GTCCGCAGCGACGGCCTGCTGTTCGTCTCCGGCCAGGTCGGCAGCCGCGACGACGGCTCTCCCGAACCCGAG 
CTGGAGACCCAGGTCCGCCGCGCCTTCGACAATCTGAATGCGGTGCTCGCCGCGGCCGGTTGCGGGTTCGAC 
GATGTGCTCGACGTCACCGTGTTCATGGTCGACGCCGAGGCCAACTTCGAGCGCATCTGGAAGATCGTCCCG 
GAGTACTGGGGCGAGGCGCCGTACCCCACGCTGACGGCGGTGGGGGTGAACTGGCTGTATGGCTTCAGCTTC 
GAGATCAAGGTGGTGGCGAGGTTGCCGGAGGGGCGGTGA