ViewGene
Locus Name:
GeneID:
Location:

GeneID:4724
TrivialName: PA14_13720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_13720
PAO1 Ortholog Locus:PA3880
Sequence Length:396
Protein Length:131
Start: 1178033
Stop: 1177638
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07267.1|AE004805_5 (AE004805) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/131 (100%), Positives = 131/131 (100%)
Sequence:
ATGATGTTCGAACGCAGCCCCGACGATCCCCTTCCCCTGGTCTACGCCTGCTCCGGCTGCTCCAACGTGGCG
CAACTGGCCAACGATCTCGCGCTGCGCCTGGATCGCGCCCGGCTGGCGGAGATGTCCTGCATCGCCGGAGTC
GGCGGCGACGTCCCGCTGCTGGTCCGCCGGGCCCGCTCCGGGCGACCGATCCTGGCCCTCGACGGTTGCCCG
CTGCATTGCGTGAAAGGCTGCCTGGCGCGCCACGAGGTAGTCCCGACCCTGCACCTGACCCTCAGCGAACAC
GGCCTGAAGAAGCGCTACGGCGAGGACTGCGAGGCGCAGGACGCCGAGCGCCTGTTCGTCGAGCTGGAGCGT
CTGCTGACGCCGGGCGGCAAGCGCCGCTGCGAATGA
Translation:
MMFERSPDDPLPLVYACSGCSNVAQLANDLALRLDRARLAEMSCIAGVGGDVPLLVRRARSGRPILALDGCP
LHCVKGCLARHEVVPTLHLTLSEHGLKKRYGEDCEAQDAERLFVELERLLTPGGKRRCE*
AnnotationID:4729GeneID:4724
AnnotatorUID: diggins
Modification Date/Time: 2005-04-25 12:12:39
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3880
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD18118.1| (AL646082) PUTATIVE LIPOPROTEIN [Ralstonia solanacearum]
          Length = 139

 Score =  129 bits (323), Expect = 4e-30
 Identities = 65/96 (67%), Positives = 73/96 (76%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9449




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26589




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31684




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4724_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4724
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7094
                           PA3880_tr
                           translation of PA3880
                           131
                           99.99
                           99.99
                           0
                           692.0
     

     
     
186874
                           gb|AAG07267.1|AE004805_5
                           (AE004805) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           131
                           99.99
                           99.99
                           0
                           692.0
     

     
     
186875
                           emb|CAA09861.1|
                           (AJ011908) hypothetical protein [Klebsiella pneumoniae]
                           147
                           49.65
                           61.90
                           21
                           340.0
     

     
     
186877
                           emb|CAD18118.1|
                           (AL646082) PUTATIVE LIPOPROTEIN [Ralstonia solanacearum]
                           145
                           48.96
                           57.24
                           20
                           308.0
     

     
     
186876
                           gb|AAP86008.1|
                           (AY305378) conserved hypothetical protein [Ralstonia eutropha]
                           151
                           46.35
                           54.96
                           22
                           330.0
     

     






      

          
GC ORFID: 47726How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3880Glimmer Score: 

          
Start: 3775905Stop: 3776300

          
Length: 396


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3880 translation of PA3880Homolog Bit Score 271.0

          
Other Homologs:  t_PA3880 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATGTTCGAACGCAGCCCCGACGATCCCCTTCCCCTGGTCTACGCCTGCTCCGGCTGCTCCAACGTGGCG 
CAACTGGCCAACGATCTCGCGCTGCGCCTGGATCGCGCCCGGCTGGCGGAGATGTCCTGCATCGCCGGAGTC 
GGCGGCGACGTCCCGCTGCTGGTCCGCCGGGCCCGCTCCGGGCGACCGATCCTGGCCCTCGACGGTTGCCCG 
CTGCATTGCGTGAAAGGCTGCCTGGCGCGCCACGAGGTAGTCCCGACCCTGCACCTGACCCTCAGCGAACAC 
GGCCTGAAGAAGCGCTACGGCGAGGACTGCGAGGCGCAGGACGCCGAGCGCCTGTTCGTCGAGCTGGAGCGT 
CTGCTGACGCCGGGCGGCAAGCGCCGCTGCGAATGA