ViewGene
Locus Name:
GeneID:
Location:

GeneID:4723
TrivialName: PA14_15660
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15660
PAO1 Ortholog Locus:
Sequence Length:996
Protein Length:331
Start: 1331350
Stop: 1332345
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: dbj|BAC45369.1| (AP005935) blr0103 [Bradyrhizobium japonicum USDA 110]
Identities = 198/329 (60%), Positives = 249/329 (75%)
Sequence:
ATGATCAACCGTCAGATCGTTCTGAGCGAGCTTCCCCGGACTGCGCTCGCTGTCCGGCATTTTCAGGGGCGC
GAGGTGCGTTGTCCGGTTCCGGCCGACGGTGAGCTGTTGCTTCGTGTCCTGTACATACCGCTGGACGCCGCC
AGCCGGGCCTGGATGCAAGGCGCGACCTATCGCCCCGGCCTCGTGGCCGGGGAGGTGATGGCGGGGTTGGGG
CTGGCCGAGGTGGTGGAATCGCGCTCGGCGTCGTTCCAGCCCGGCGACCTGGTCTGTGCCGAGACCGGCTGG
CAGACTTTCGCGGTCGTGCCGGCGGCCGGGCTCATCAGGCTGCCGCGCCTGGAGCCCCTCACGCATCTGCTC
AGCGTCTACGGCGTAGCAGGCCTGACGGCCTATTTCGGCCTTCTCGAATGCGCCAGGCCGGTGCAGGGCGAA
ACGCTGGCAGTGTCTGCCGCCGCCGGTGCCGTCGGCTCTATCGTCGGGCAGATCGCCAGGATCAGGGGCTGC
CGTACCGTCGGCATTGCGGGAGGCGCCAGCAAATGCGCCTGGCTGGTTCGTGAACTGGGTTTCGACGCGGCA
CTCGACTACAAGACGGGGACGCTGGCCGATGACTTGCGGCGGACCTGTCCGGACGGGATCGACGCGTATTTC
GACAACACTGGCGGTGCAATCCTCGATGCCTGCCTGCCGAACATGGCGGAGCATGGACGGGTCGCCTGTTGC
GGCGCGATTTCGCAATACGACCTGGACCGACCCGCCGCCGGTCCTGCCGGGATCCCCGGGCTGCTCATCATC
AAGCGCCTGACGTTGCGCGGATTCCTTCTTGGCGATTTTCTCGAGAGCAGAGAGCGGGCGCTCTCCGATCTC
AAGGCATGGGTCGACTCCGGGCAGATCAAGGTATACGAGGATGTGCTCTACGGGCTGGAAAGCCTGCCGGCG
GCTCTGGTCGGCCTGTTGAATGGCGAGAACTTCGGCAAGCGCATCGTGAAGGTAGCCTGA
Translation:
MINRQIVLSELPRTALAVRHFQGREVRCPVPADGELLLRVLYIPLDAASRAWMQGATYRPGLVAGEVMAGLG
LAEVVESRSASFQPGDLVCAETGWQTFAVVPAAGLIRLPRLEPLTHLLSVYGVAGLTAYFGLLECARPVQGE
TLAVSAAAGAVGSIVGQIARIRGCRTVGIAGGASKCAWLVRELGFDAALDYKTGTLADDLRRTCPDGIDAYF
DNTGGAILDACLPNMAEHGRVACCGAISQYDLDRPAAGPAGIPGLLIIKRLTLRGFLLGDFLESRERALSDL
KAWVDSGQIKVYEDVLYGLESLPAALVGLLNGENFGKRIVKVA*
AnnotationID:4728GeneID:4723
AnnotatorUID: danlee
Modification Date/Time: 2005-10-18 15:03:07
Gene Name:
Confidence Code:3
GeneProduct:probable oxidoreductase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2130
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
gi|77689878|ref|ZP_00805058.1|  Zinc-containing alcohol dehydrogenase superfamily [Rhodopseudomonas palustris BisB5]
     Length=332
     Score =  413 bits (1062),  Expect = 4e-114
     Identities = 197/329 (59%), Positives = 251/329 (76%), Gaps = 0/329 (0%)

gi|27375215|ref|NP_766744.1|  probable oxidoreductase [Bradyrhizobium japonicum USDA 110]
gi|27348351|dbj|BAC45369.1|  blr0103 [Bradyrhizobium japonicum USDA 110]
     Length=333
     Score =  409 bits (1052),  Expect = 5e-113
     Identities = 198/329 (60%), Positives = 249/329 (75%), Gaps = 0/329 (0%)

gi|39933552|ref|NP_945828.1|  putative oxidoreductase [Rhodopseudomonas palustris CGA009]
gi|39647398|emb|CAE25919.1|  putative oxidoreductase [Rhodopseudomonas palustris CGA009]
     Length=333
     Score =  406 bits (1043),  Expect = 6e-112
     Identities = 198/329 (60%), Positives = 248/329 (75%), Gaps = 0/329 (0%)







 
Structural Features:
COG2130, Putative NADP-dependent oxidoreductases [General function prediction only].
             CD-Length = 340 residues,  97.6% aligned
             Score =  305 bits (783), Expect = 5e-84

COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production 
and conversion / General function prediction only].
             CD-Length = 326 residues,  94.8% aligned
             Score =  111 bits (278), Expect = 1e-25






   
Genomic Context:






   
Comment:


















    ReferenceID:9447




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26587




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4723
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
186856
                           dbj|BAC45369.1|
                           (AP005935) blr0103 [Bradyrhizobium japonicum USDA 110]
                           334
                           59.28
                           74.55
                           4
                           1051.0
     

     
     
186857
                           emb|CAE25919.1|
                           (BX572594) putative oxidoreductase [Rhodopseudomonas palustris CGA009]
                           334
                           59.28
                           74.25
                           4
                           1042.0
     

     
     
186858
                           gb|AAN67435.1|AE016371_1
                           (AE016780) alcohol dehydrogenase, zinc-containing [Pseudomonas putida KT2440]
                           335
                           44.77
                           60.89
                           6
                           732.0
     

     
     
186859
                           dbj|BAB53057.1|
                           (AP003010) quinone oxidoreductase [Mesorhizobium loti]
                           340
                           44.41
                           60.88
                           10
                           703.0
     

     
     
7093
                           PA1648_tr
                           translation of PA1648
                           342
                           42.98
                           59.06
                           19
                           698.0
     

     






      

          
GC ORFID: 47725How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1648Glimmer Score: 

          
Start: 3622587Stop: 3621592

          
Length: 996


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1648 translation of PA1648Homolog Bit Score 271.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene567 (ORF: BLASTX 267.0), t_PA1648 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCAACCGTCAGATCGTTCTGAGCGAGCTTCCCCGGACTGCGCTCGCTGTCCGGCATTTTCAGGGGCGC 
GAGGTGCGTTGTCCGGTTCCGGCCGACGGTGAGCTGTTGCTTCGTGTCCTGTACATACCGCTGGACGCCGCC 
AGCCGGGCCTGGATGCAAGGCGCGACCTATCGCCCCGGCCTCGTGGCCGGGGAGGTGATGGCGGGGTTGGGG 
CTGGCCGAGGTGGTGGAATCGCGCTCGGCGTCGTTCCAGCCCGGCGACCTGGTCTGTGCCGAGACCGGCTGG 
CAGACTTTCGCGGTCGTGCCGGCGGCCGGGCTCATCAGGCTGCCGCGCCTGGAGCCCCTCACGCATCTGCTC 
AGCGTCTACGGCGTAGCAGGCCTGACGGCCTATTTCGGCCTTCTCGAATGCGCCAGGCCGGTGCAGGGCGAA 
ACGCTGGCAGTGTCTGCCGCCGCCGGTGCCGTCGGCTCTATCGTCGGGCAGATCGCCAGGATCAGGGGCTGC 
CGTACCGTCGGCATTGCGGGAGGCGCCAGCAAATGCGCCTGGCTGGTTCGTGAACTGGGTTTCGACGCGGCA 
CTCGACTACAAGACGGGGACGCTGGCCGATGACTTGCGGCGGACCTGTCCGGACGGGATCGACGCGTATTTC 
GACAACACTGGCGGTGCAATCCTCGATGCCTGCCTGCCGAACATGGCGGAGCATGGACGGGTCGCCTGTTGC 
GGCGCGATTTCGCAATACGACCTGGACCGACCCGCCGCCGGTCCTGCCGGGATCCCCGGGCTGCTCATCATC 
AAGCGCCTGACGTTGCGCGGATTCCTTCTTGGCGATTTTCTCGAGAGCAGAGAGCGGGCGCTCTCCGATCTC 
AAGGCATGGGTCGACTCCGGGCAGATCAAGGTATACGAGGATGTGCTCTACGGGCTGGAAAGCCTGCCGGCG 
GCTCTGGTCGGCCTGTTGAATGGCGAGAACTTCGGCAAGCGCATCGTGAAGGTAGCCTGA