ViewGene
Locus Name:
GeneID:
Location:

GeneID:4722
TrivialName: PA14_25930
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_25930
PAO1 Ortholog Locus:PA2947
Sequence Length:429
Protein Length:142
Start: 2262276
Stop: 2261848
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06335.1|AE004721_3 (AE004721) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/142 (97%), Positives = 140/142 (98%)
Sequence:
ATGCCCCTGCCCATCCCCAGCCTGCTGATCGCCGGCATCGGCTGCCGCCGAGGCTGTAGCGCCGAGCATCTA
CGCGCGCTGCTGGAGCGAACGCTGGGCGAACACGGGCACAGCCTGGCCGACCTGGACGCCCTCGCCAGCATC
GACGGCAAACGCGACGAACCCGGCCTGCGGCAACTGGCCACGCTGCTCGAACGCCCCGTGCATTTCCTCGCG
CCCGCCGTCCTGCACGACTACGAGCCGCGCCTGCTCAGCCCCTCCGCCGTCGCGCTGCGCGAAACCGGCTGC
TCCAGCGTCGCCGAGGCCGCCGCCCTGGCCCTGGCCGAACACCTGGGCGGCGGTCGCGCCGATCTGCTCGGG
GCGAAACGCAGCGACGATCGGGCGAGCATCGCCCTGGCACGACTTCTCACCGAACGAGAACTCCCATGA
Translation:
MPLPIPSLLIAGIGCRRGCSAEHLRALLERTLGEHGHSLADLDALASIDGKRDEPGLRQLATLLERPVHFLA
PAVLHDYEPRLLSPSAVALRETGCSSVAEAAALALAEHLGGGRADLLGAKRSDDRASIALARLLTERELP*
AnnotationID:4727GeneID:4722
AnnotatorUID: diggins
Modification Date/Time: 2005-04-08 17:05:17
Gene Name:
Confidence Code:3
GeneProduct:putative cobalamin biosynthesis protein
Cell Localization:()
Synonyms:PA2947
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69011.1|AE016533_3 (AE016786) cobalamin biosynthesis protein cobE, putative
           [Pseudomonas putida KT2440]
          Length = 129

 Score = 94.4 bits (233), Expect = 2e-19
 Identities = 62/123 (50%), Positives = 75/123 (60%), Gaps = 1/123 (0%)

>emb|CAC46526.1| (AL591789) PROBABLE COBALAMIN BIOSYNTHESIS PROTEIN [Sinorhizobium
           meliloti]
          Length = 142

 Score = 81.6 bits (200), Expect = 1e-15
 Identities = 51/129 (39%), Positives = 67/129 (51%), Gaps = 4/129 (3%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9445




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26585




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36093




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4722_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4722
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7092
                           PA2947_tr
                           translation of PA2947
                           142
                           97.88
                           98.59
                           0
                           692.0
     

     
     
186855
                           gb|AAG06335.1|AE004721_3
                           (AE004721) hypothetical protein PA2947 [Pseudomonas aeruginosa PAO1]
                           142
                           97.88
                           98.59
                           0
                           692.0
     

     






      

          
GC ORFID: 47724How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2947Glimmer Score: 

          
Start: 2691649Stop: 2692077

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2947 translation of PA2947Homolog Bit Score 271.0

          
Other Homologs:  t_PA2947 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCTGCCCATCCCCAGCCTGCTGATCGCCGGCATCGGCTGCCGCCGAGGCTGTAGCGCCGAGCATCTA 
CGCGCGCTGCTGGAGCGAACGCTGGGCGAACACGGGCACAGCCTGGCCGACCTGGACGCCCTCGCCAGCATC 
GACGGCAAACGCGACGAACCCGGCCTGCGGCAACTGGCCACGCTGCTCGAACGCCCCGTGCATTTCCTCGCG 
CCCGCCGTCCTGCACGACTACGAGCCGCGCCTGCTCAGCCCCTCCGCCGTCGCGCTGCGCGAAACCGGCTGC 
TCCAGCGTCGCCGAGGCCGCCGCCCTGGCCCTGGCCGAACACCTGGGCGGCGGTCGCGCCGATCTGCTCGGG 
GCGAAACGCAGCGACGATCGGGCGAGCATCGCCCTGGCACGACTTCTCACCGAACGAGAACTCCCATGA