ViewGene

Locus Name:
GeneID:
Location:

GeneID:4721
TrivialName: PA14_29520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29520
PAO1 Ortholog Locus:PA2674
Sequence Length:411
Protein Length:136
Start: 2560566
Stop: 2560976
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06062.1|AE004695_15 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 135/136 (99%), Positives = 135/136 (99%)
Sequence:
ATGCCGATGTCGGTTACGCGCCCAAACGTTGACCAGGCCGCGTTCACCTTGCTCGAACTGCTGGTGGTGCTG
GTGATCGTCGGGGCCATTGCTGCGGTGGCGTTGCCCGGCCTGGTGAGGATGCAGGAGACCTGGGCGCGCAGG
ACCGCGCTGGACGATCTGTTCAATCAATTGCAGACCCTGGGCTATCGCGTGCGCAGCGACGGGCGGGAGCTG
CTCATTGATGAGAGCGGGGCGGTTCCCGAGCAGTTGCTGCGACTGCCCGATGGCTGGACGGTTACTGCTCGG
CCGCCGATACGTTACATGGCAAACGGAGTTTGCCTGGGCGGAAAGTTGCAGGTCCATCATGGGCGCGCGACA
CATACGCTGCTGCTTCAGCCCCCCCTCTGCGCGCCCGGGACGATCCGCTGA
Translation:
MPMSVTRPNVDQAAFTLLELLVVLVIVGAIAAVALPGLVRMQETWARRTALDDLFNQLQTLGYRVRSDGREL
LIDESGAVPEQLLRLPDGWTVTARPPIRYMANGVCLGGKLQVHHGRATHTLLLQPPLCAPGTIR*
AnnotationID:4726GeneID:4721
AnnotatorUID: diggins
Modification Date/Time: 2004-12-10 07:07:18
Gene Name:
Confidence Code:3
GeneProduct:type II secretion system protein
Cell Localization:()
Synonyms:hplU
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9443
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26583
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36345
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4721_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4721

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7091 PA2674_tr translation of PA2674 136 99.26 99.26 0 694.0
186854 gb|AAG06062.1|AE004695_15 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 136 99.26 99.26 0 694.0
GC ORFID: 47723How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2674Glimmer Score:
Start: 2393360Stop: 2392950
Length: 411
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2674 translation of PA2674Homolog Bit Score 271.0
Other Homologs:
GC ORF Sequence
ATGCCGATGTCGGTTACGCGCCCAAACGTTGACCAGGCCGCGTTCACCTTGCTCGAACTGCTGGTGGTGCTG
GTGATCGTCGGGGCCATTGCTGCGGTGGCGTTGCCCGGCCTGGTGAGGATGCAGGAGACCTGGGCGCGCAGG
ACCGCGCTGGACGATCTGTTCAATCAATTGCAGACCCTGGGCTATCGCGTGCGCAGCGACGGGCGGGAGCTG
CTCATTGATGAGAGCGGGGCGGTTCCCGAGCAGTTGCTGCGACTGCCCGATGGCTGGACGGTTACTGCTCGG
CCGCCGATACGTTACATGGCAAACGGAGTTTGCCTGGGCGGAAAGTTGCAGGTCCATCATGGGCGCGCGACA
CATACGCTGCTGCTTCAGCCCCCCCTCTGCGCGCCCGGGACGATCCGCTGA