ViewGene
Locus Name:
GeneID:
Location:

GeneID:4720
TrivialName: PA14_38050
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_38050
PAO1 Ortholog Locus:PA2046
Sequence Length:408
Protein Length:135
Start: 3394935
Stop: 3395342
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05434.1|AE004631_3 (AE004631) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/135 (97%), Positives = 133/135 (98%)
Sequence:
ATGGGCGCCACCCGCCAGCGCCTGGTCGAGTTGCAGGAGGCCTTCGCCGACCCACGGCGACCGCTGCTGGTG
ATCCCGCAACCGCGCCGCACCATCGGCTTCACCACGGCGGCCAGCAAGGTGCGCGGGGGCTTTTACGTTCTT
GCCGACGGGCCGTTCCGCCAGGCCTACCTCGGCGCGCGCTGGAATGTCGGCGAGCTGACCCTGGACGGCGTC
GACTACCTGGAGGGCGACGCCGAGGCGTACTGCCCGGGCTACGGCCGTTCGGCACTGATTCCATTGCGCGGA
GGCGCTTGGCGCGAGGGCACGCTGGCGCCGGAAGAACCCGGCCTGCGCGGCCGCCTGGCGACTGCTCGCAGC
CTCGTCGACGGGCGGACCCTTTATTGCGCAGCGGAGAATGCTCCTTGA
Translation:
MGATRQRLVELQEAFADPRRPLLVIPQPRRTIGFTTAASKVRGGFYVLADGPFRQAYLGARWNVGELTLDGV
DYLEGDAEAYCPGYGRSALIPLRGGAWREGTLAPEEPGLRGRLATARSLVDGRTLYCAAENAP*
AnnotationID:4725GeneID:4720
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 05:05:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2046
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9441




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26581




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4720
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7090
                           PA2046_tr
                           translation of PA2046
                           135
                           97.77
                           98.51
                           0
                           694.0
     

     
     
186853
                           gb|AAG05434.1|AE004631_3
                           (AE004631) hypothetical protein PA2046 [Pseudomonas aeruginosa PAO1]
                           135
                           97.77
                           98.51
                           0
                           694.0
     

     






      

          
GC ORFID: 47722How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2046Glimmer Score: 

          
Start: 1558975Stop: 1558568

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2046 translation of PA2046Homolog Bit Score 271.0

          
Other Homologs:  t_PA2046 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGGCGCCACCCGCCAGCGCCTGGTCGAGTTGCAGGAGGCCTTCGCCGACCCACGGCGACCGCTGCTGGTG 
ATCCCGCAACCGCGCCGCACCATCGGCTTCACCACGGCGGCCAGCAAGGTGCGCGGGGGCTTTTACGTTCTT 
GCCGACGGGCCGTTCCGCCAGGCCTACCTCGGCGCGCGCTGGAATGTCGGCGAGCTGACCCTGGACGGCGTC 
GACTACCTGGAGGGCGACGCCGAGGCGTACTGCCCGGGCTACGGCCGTTCGGCACTGATTCCATTGCGCGGA 
GGCGCTTGGCGCGAGGGCACGCTGGCGCCGGAAGAACCCGGCCTGCGCGGCCGCCTGGCGACTGCTCGCAGC 
CTCGTCGACGGGCGGACCCTTTATTGCGCAGCGGAGAATGCTCCTTGA