ViewGene

Locus Name:
GeneID:
Location:

GeneID:4719
TrivialName: PA14_54220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54220
PAO1 Ortholog Locus:PA0778
Sequence Length:405
Protein Length:134
Start: 4812268
Stop: 4812672
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04167.1|AE004512_10 (AE004512) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 134/134 (100%), Positives = 134/134 (100%)
Sequence:
ATGTCCTTTTCCCCCTCCCGTCTGCTGCTGCCATTGTCCATCGTGGTCCTGGCCGGCTGCGCCGGGCAACAG
AAGCCGGTGGTCACCCTGGACGACGCCGACGACTGTTCGCCGCTGAAGCTGACGCAAGGCCAGGAACTGGTG
CTGACCCTGCCGAGCAATCCCACCACCGGCTTCCGCTGGGAACTGCGCAACCCCGCCGCCAGTGTGCTCAAG
CGCCTTGGCCCGGAGGTCTACAGCAATTCCGAAGAAGACAGCGGCCTGGTTGGCAGCGGCGGCGAATCGACC
TGGCGCTTCCGCGTCGCCGCCAGCGGCGACGACCGCCTGGAACTGGTCTACCGGCGGCCCTGGGAAAAGGAC
GCGGAACCGGCGGAAAGCTTTTCCTGCGCGATCCAGGTGCGCTGA
Translation:
MSFSPSRLLLPLSIVVLAGCAGQQKPVVTLDDADDCSPLKLTQGQELVLTLPSNPTTGFRWELRNPAASVLK
RLGPEVYSNSEEDSGLVGSGGESTWRFRVAASGDDRLELVYRRPWEKDAEPAESFSCAIQVR*
AnnotationID:4724GeneID:4719
AnnotatorUID: danlee
Modification Date/Time: 2004-04-14 17:05:06
Gene Name:icp
Confidence Code:1
GeneProduct:inhibitor of cysteine peptidase
Cell Localization:()
Synonyms:PA0778
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:chagasin-like protein
Functional Category Confidence Code:5
COGs:COG5513
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG5513, Predicted secreted protein [Function unknown].
      CD-Length = 113 residues, 100.0% aligned
      Score =  137 bits (347), Expect = 7e-34
Genomic Context:
Comment:
ReferenceID:9439
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26579
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:4719

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7089 PA0778_tr translation of PA0778 134 99.99 99.99 0 694.0
186850 gb|AAG04167.1|AE004512_10 (AE004512) hypothetical protein PA0778 [Pseudomonas aeruginosa PAO1] 134 99.99 99.99 0 694.0
186852 gb|AAO57667.1| (AE016871) lipoprotein, putative [Pseudomonas syringae pv. tomato str. DC3000] 134 48.50 65.67 4 354.0
186851 gb|AAN67064.1|AE016335_4 (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440] 192 35.93 48.43 60 356.0
GC ORFID: 47721How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0778Glimmer Score:
Start: 141639Stop: 141235
Length: 405
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0778 translation of PA0778Homolog Bit Score 271.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6155 (ORF: BLASTX 147.0), t_PA0778 (ORF: GLIMMER)
GC ORF Sequence
ATGTCCTTTTCCCCCTCCCGTCTGCTGCTGCCATTGTCCATCGTGGTCCTGGCCGGCTGCGCCGGGCAACAG
AAGCCGGTGGTCACCCTGGACGACGCCGACGACTGTTCGCCGCTGAAGCTGACGCAAGGCCAGGAACTGGTG
CTGACCCTGCCGAGCAATCCCACCACCGGCTTCCGCTGGGAACTGCGCAACCCCGCCGCCAGTGTGCTCAAG
CGCCTTGGCCCGGAGGTCTACAGCAATTCCGAAGAAGACAGCGGCCTGGTTGGCAGCGGCGGCGAATCGACC
TGGCGCTTCCGCGTCGCCGCCAGCGGCGACGACCGCCTGGAACTGGTCTACCGGCGGCCCTGGGAAAAGGAC
GCGGAACCGGCGGAAAGCTTTTCCTGCGCGATCCAGGTGCGCTGA