ViewGene
Locus Name:
GeneID:
Location:

GeneID:4718
TrivialName: PA14_69100
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69100
PAO1 Ortholog Locus:PA5233
Sequence Length:420
Protein Length:139
Start: 6163741
Stop: 6163322
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08618.1|AE004936_1 (AE004936) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
GTGAGAACCCCCATTGCCCTGTCGCTGGCCCTGTGCCTGAGTCTGTTCCCGTCGTTCGCCTCGGCCGAGGAG
GCCGCGCCGGAAGGCGAGGGCGCGAACAAGCCGGTCTACGTCGACCTGACCCCGGCGCTGGTCGGCAACTAC
GGCAGCGGGCCGCGCCTGCAGTACTACAAGGCCGACATCGCTCTGCAGGTGGCCGACAAGGACGCGGCGACC
AAGGTCGAGCATCACGAGCCCTTGATCCGCAACCAGTTGATCATGCTGTTCGCCCAGCAGACCGACCAGAGC
CTGGGTACGGTCGAGGCCAAGGAAAGCCTGCGCCAGGAGGCGCTGAAGCAGGTCCAGCAGACCCTCGAGCAG
GAAGAGGGCAAGCCGCTGGTGACCGACCTGCTGTTCAACAACCTCATCGTCCAGCCCTGA
Translation:
MRTPIALSLALCLSLFPSFASAEEAAPEGEGANKPVYVDLTPALVGNYGSGPRLQYYKADIALQVADKDAAT
KVEHHEPLIRNQLIMLFAQQTDQSLGTVEAKESLRQEALKQVQQTLEQEEGKPLVTDLLFNNLIVQP*
AnnotationID:4723GeneID:4718
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:17
Gene Name:
Confidence Code:3
GeneProduct:putative flagellar protein FliL
Cell Localization:()
Synonyms:PA5233
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1580,pfam03748
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58656.1| (AE016875) flagellar protein FliL, putative [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 135

 Score =  134 bits (336), Expect = 1e-31
 Identities = 75/140 (53%), Positives = 93/140 (66%), Gaps = 7/140 (5%)








 
Structural Features:
COG1580, FliL, Flagellar basal body-associated protein [Cell motility and secretion]
CD-Length = 159 residues,  86.2% aligned
Score =  111 bits (280), Expect = 3e-26
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 5/140 (3%)

pfam03748, FliL, Flagellar basal body-associated protein FliL. 
CD-Length = 151 residues,  94.7% aligned
Score =  101 bits (253), Expect = 3e-23
Identities = 44/146 (30%), Positives = 71/146 (48%), Gaps = 11/146 (7%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15168




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26577




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34860




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4718_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4718
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7088
                           PA5233_tr
                           translation of PA5233
                           139
                           99.99
                           99.99
                           0
                           695.0
     

     
     
186847
                           gb|AAG08618.1|AE004936_1
                           (AE004936) hypothetical protein PA5233 [Pseudomonas aeruginosa PAO1]
                           139
                           99.28
                           99.99
                           0
                           692.0
     

     
     
186848
                           gb|AAN70774.1|AE016721_7
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           160
                           53.12
                           61.25
                           28
                           384.0
     

     
     
186849
                           gb|AAO58656.1|
                           (AE016875) flagellar protein FliL, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           141
                           52.48
                           65.95
                           8
                           338.0
     

     






      

          
GC ORFID: 47720How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5233Glimmer Score: 

          
Start: 5427428Stop: 5427009

          
Length: 420


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5233 translation of PA5233Homolog Bit Score 272.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene384 (ORF: BLASTX 134.0), t_PA5233 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGAACCCCCATTGCCCTGTCGCTGGCCCTGTGCCTGAGTCTGTTCCCGTCGTTCGCCTCGGCCGAGGAG 
GCCGCGCCGGAAGGCGAGGGCGCGAACAAGCCGGTCTACGTCGACCTGACCCCGGCGCTGGTCGGCAACTAC 
GGCAGCGGGCCGCGCCTGCAGTACTACAAGGCCGACATCGCTCTGCAGGTGGCCGACAAGGACGCGGCGACC 
AAGGTCGAGCATCACGAGCCCTTGATCCGCAACCAGTTGATCATGCTGTTCGCCCAGCAGACCGACCAGAGC 
CTGGGTACGGTCGAGGCCAAGGAAAGCCTGCGCCAGGAGGCGCTGAAGCAGGTCCAGCAGACCCTCGAGCAG 
GAAGAGGGCAAGCCGCTGGTGACCGACCTGCTGTTCAACAACCTCATCGTCCAGCCCTGA