ViewGene
Locus Name:
GeneID:
Location:

GeneID:4717
TrivialName: PA14_64460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64460
PAO1 Ortholog Locus:PA4874
Sequence Length:417
Protein Length:138
Start: 5743449
Stop: 5743033
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08259.1|AE004901_1 (AE004901) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/138 (100%), Positives = 138/138 (100%)
Sequence:
ATGAATATCCTGCGTATCCCGATGTTCGTATTGGCCATGGCCGTCTCGGCCCATGGTTTCGCTGCCACCGCG
CAGCAGGAGAAGATGACCGCCTGCAACGCCGAGGCCACCACCAAGGCGCTCAAGGGCGACGAACGCAAGGCG
TTCATGAGCGGCTGCCTGAAGGCCGGCGCGCCTGCCGGCGGCAAGGCCACCGCCCAGCAGGAGAAGATGAAG
AGCTGCAACGCCGACGCCAGCGCCAAGTCGCTCAAGGGCGACGAGCGCAAGGCATTCATGAGCAGTTGCCTG
AAGGCCGGCGGCAGCGCCAAGGCGGCGACCCAGCAGGAGAAGATGAAGACCTGCAACGCCGACGCCACCGCC
AAGGCGCTCAAGGGCGACGAACGCAAGGCGTTCATGAGCACCTGCCTGAAGAAGTGA
Translation:
MNILRIPMFVLAMAVSAHGFAATAQQEKMTACNAEATTKALKGDERKAFMSGCLKAGAPAGGKATAQQEKMK
SCNADASAKSLKGDERKAFMSSCLKAGGSAKAATQQEKMKTCNADATAKALKGDERKAFMSTCLKK*
AnnotationID:4722GeneID:4717
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 11:11:21
Gene Name:
Confidence Code:3
GeneProduct:putative phosphate starvation-inducible protein
Cell Localization:()
Synonyms:psiF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70420.1|AE016683_11 (AE016792) phosphate starvation-inducible protein, PSIF precursor
           [Pseudomonas putida KT2440]
          Length = 106

 Score =  127 bits (320), Expect = 8e-30
 Identities = 67/98 (68%), Positives = 75/98 (76%), Gaps = 6/98 (6%)

>gb|AAO58329.1| (AE016873) phosphate starvation-inducible protein PsiF
          [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 96

 Score =  122 bits (307), Expect = 3e-28
 Identities = 62/97 (63%), Positives = 73/97 (75%), Gaps = 3/97 (3%)

>gb|AAM86597.1|AE013906_1 (AE013906) putative starvation-inducible protein [Yersinia pestis
           KIM]
          Length = 111

 Score =  103 bits (257), Expect = 2e-22
 Identities = 52/78 (66%), Positives = 62/78 (79%), Gaps = 1/78 (1%)






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9435




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26575




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4717
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7087
                           PA4874_tr
                           translation of PA4874
                           138
                           99.99
                           99.99
                           0
                           695.0
     

     
     
186842
                           gb|AAG08259.1|AE004901_1
                           (AE004901) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           138
                           99.99
                           99.99
                           0
                           695.0
     

     
     
186844
                           gb|AAO58329.1|
                           (AE016873) phosphate starvation-inducible protein PsiF [Pseudomonas syringae pv. tomato str. DC3000]
                           139
                           48.20
                           54.67
                           44
                           308.0
     

     
     
186843
                           gb|AAN70420.1|AE016683_11
                           (AE016792) phosphate starvation-inducible protein, PSIF precursor [Pseudomonas putida KT2440]
                           150
                           48.00
                           53.33
                           56
                           328.0
     

     
     
186845
                           gb|AAM86597.1|AE013906_1
                           (AE013906) putative starvation-inducible protein [Yersinia pestis KIM]
                           152
                           40.13
                           52.63
                           55
                           263.0
     

     






      

          
GC ORFID: 47719How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4874Glimmer Score: 

          
Start: 5007130Stop: 5006714

          
Length: 417


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4874 translation of PA4874Homolog Bit Score 272.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5277 (ORF: BLASTX 112.0), t_PA4874 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATATCCTGCGTATCCCGATGTTCGTATTGGCCATGGCCGTCTCGGCCCATGGTTTCGCTGCCACCGCG 
CAGCAGGAGAAGATGACCGCCTGCAACGCCGAGGCCACCACCAAGGCGCTCAAGGGCGACGAACGCAAGGCG 
TTCATGAGCGGCTGCCTGAAGGCCGGCGCGCCTGCCGGCGGCAAGGCCACCGCCCAGCAGGAGAAGATGAAG 
AGCTGCAACGCCGACGCCAGCGCCAAGTCGCTCAAGGGCGACGAGCGCAAGGCATTCATGAGCAGTTGCCTG 
AAGGCCGGCGGCAGCGCCAAGGCGGCGACCCAGCAGGAGAAGATGAAGACCTGCAACGCCGACGCCACCGCC 
AAGGCGCTCAAGGGCGACGAACGCAAGGCGTTCATGAGCACCTGCCTGAAGAAGTGA