ViewGene

Locus Name:
GeneID:
Location:

GeneID:4716
TrivialName: PA14_29530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29530
PAO1 Ortholog Locus:PA2673
Sequence Length:426
Protein Length:141
Start: 2560976
Stop: 2561401
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06061.1|AE004695_14 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 138/141 (97%), Positives = 140/141 (99%)
Sequence:
ATGCCGGCGCGGCAGGAAGGCTTCACGCTCCTGGAGGCGGTGGTTGCGCTGACGCTCCTGGCAGTGGTCGGC
GGTGCGCTATTCGCCTGGCTCAACAGTGCCTTTCGGAGCATGCAGCGGGTCGAGGCGGCCGAGCTGCGCATC
GAGACGGCCCGGGTGGCGATGGCCTATCTGGAGCGCATGAACCCTGCGCTCGAACCCGCAGGCAGGGTCCGG
CTGGGGCACTACCGGCTGGAGTGGCGAAGTTCGCCGCTGTCCGCATCGAAAGCGGCGGTGGGCCGCCATAGC
GGCAGTCCGGGCATCTACGACGTGACCTTGTTCAGGGTCGTCGCCAGCATCCAGGCCGGCGATGGAACGCCG
CAGGCGCTGCAACTGGAGCTTCCCGGTTACGTGGTCATCCCAGCGCGACTGGGTGATGGACCATGA
Translation:
MPARQEGFTLLEAVVALTLLAVVGGALFAWLNSAFRSMQRVEAAELRIETARVAMAYLERMNPALEPAGRVR
LGHYRLEWRSSPLSASKAAVGRHSGSPGIYDVTLFRVVASIQAGDGTPQALQLELPGYVVIPARLGDGP*
AnnotationID:4721GeneID:4716
AnnotatorUID: diggins
Modification Date/Time: 2004-12-10 07:07:15
Gene Name:
Confidence Code:3
GeneProduct:type II secretion system protein
Cell Localization:()
Synonyms:hplV
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9433
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26573
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36344
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4716_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4716

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7086 PA2673_tr translation of PA2673 141 97.87 99.29 0 695.0
186841 gb|AAG06061.1|AE004695_14 (AE004695) probable type II secretion system protein [Pseudomonas aeruginosa PAO1] 141 97.87 99.29 0 695.0
GC ORFID: 47718How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2673Glimmer Score:
Start: 2392950Stop: 2392525
Length: 426
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2673 translation of PA2673Homolog Bit Score 272.0
Other Homologs: t_PA2673 (ORF: GLIMMER)
GC ORF Sequence
ATGCCGGCGCGGCAGGAAGGCTTCACGCTCCTGGAGGCGGTGGTTGCGCTGACGCTCCTGGCAGTGGTCGGC
GGTGCGCTATTCGCCTGGCTCAACAGTGCCTTTCGGAGCATGCAGCGGGTCGAGGCGGCCGAGCTGCGCATC
GAGACGGCCCGGGTGGCGATGGCCTATCTGGAGCGCATGAACCCTGCGCTCGAACCCGCAGGCAGGGTCCGG
CTGGGGCACTACCGGCTGGAGTGGCGAAGTTCGCCGCTGTCCGCATCGAAAGCGGCGGTGGGCCGCCATAGC
GGCAGTCCGGGCATCTACGACGTGACCTTGTTCAGGGTCGTCGCCAGCATCCAGGCCGGCGATGGAACGCCG
CAGGCGCTGCAACTGGAGCTTCCCGGTTACGTGGTCATCCCAGCGCGACTGGGTGATGGACCATGA