ViewGene
Locus Name:
GeneID:
Location:

GeneID:4715
TrivialName: PA14_30020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_30020
PAO1 Ortholog Locus:PA2637
Sequence Length:414
Protein Length:137
Start: 2599127
Stop: 2598714
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06025.1|AE004692_4 (AE004692) NADH dehydrogenase I chain A [Pseudomonas aeruginosa PAO1]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGCCAAACCCAGCTGAACTTGCAGCTCATCACTGGGGATTCGCTGCCTTCCTTCTAGGGGTCGTTGGCCTT
CTCGCCTTCATGCTAGGGGTTTCGTCCCTGCTTGGCAGCAAGGCATTTGGTCGCAGCAAGAACGAACCCTTC
GAATCCGGGATCGTCCCCACCGGAGGCGCACGCCTGCGTCTCTCGGCAAAATTCTATCTGGTCGCGATGCTC
TTCGTGATCTTCGACGTCGAAGCCCTCTTCCTCTTCGCCTGGTCGGTGTCGGTTCGCGAAAGCGGCTGGGCC
GGCCTGATCGAGGCAACCATTTTCATAGCAATTCTGTTGGCGGGTCTTGTCTATCTTTGGCGGATCGGTGCG
CTCGATTGGGCTCCCGAAAGCCGTCGCAAGCGGCAGGCGAAGCTAAAACAATGA
Translation:
MPNPAELAAHHWGFAAFLLGVVGLLAFMLGVSSLLGSKAFGRSKNEPFESGIVPTGGARLRLSAKFYLVAML
FVIFDVEALFLFAWSVSVRESGWAGLIEATIFIAILLAGLVYLWRIGALDWAPESRRKRQAKLKQ*
AnnotationID:4720GeneID:4715
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 11:11:42
Gene Name:nuoA
Confidence Code:2
GeneProduct:NADH dehydrogenase I chain A
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0838
Secondary Functional Category(ies):
EC Number:1.6.5.3
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56843.1| (AE016868) NADH dehydrogenase I, A subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 137

 Score =  236 bits (602), Expect = 2e-62
 Identities = 115/137 (83%), Positives = 124/137 (90%)

>gb|AAN69702.1|AE016606_5 (AE016789) NADH dehydrogenase I, A subunit [Pseudomonas putida
           KT2440]
          Length = 137

 Score =  234 bits (596), Expect = 8e-62
 Identities = 114/137 (83%), Positives = 125/137 (91%)

>gb|AAN54094.1|AE015546_11 (AE015546) NADH dehydrogenase I, A subunit [Shewanella oneidensis
           MR-1]
          Length = 134

 Score =  177 bits (448), Expect = 1e-44
 Identities = 81/121 (66%), Positives = 101/121 (83%)






 
Structural Features:
COG0838, NuoA, NADH:ubiquinone oxidoreductase subunit 3 (chain A) 
[Energy production and conversion]
CD-Length = 123 residues,  99.2% aligned
Score =  129 bits (326), Expect = 1e-31
Identities = 57/122 (46%), Positives = 75/122 (61%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9431




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26571




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33226




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4715_cdd.html


    		




 
URL:

















    ReferenceID:34572




  
Author/Investigator(s):
        Camacho Carvajal MM, Wijfjes AH, Mulders IH, Lugtenberg BJ, Bloemberg GV.





  
Title:
        Characterization of NADH dehydrogenases of Pseudomonas fluorescens WCS365 and their role in competitive root colonization.




  
PubMed:
        12118882


MedLine:
        




    
Source:
Mol Plant Microbe Interact. 2002 Jul;15(7):662-71.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=12118882









           
Homologs By Global Alignment 

           

       



     
Gene ID:4715
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7084
                           PA2637_tr
                           translation of PA2637
                           137
                           99.99
                           99.99
                           0
                           696.0
     

     
     
186812
                           gb|AAG06025.1|AE004692_4
                           (AE004692) NADH dehydrogenase I chain A [Pseudomonas aeruginosa PAO1]
                           137
                           99.99
                           99.99
                           0
                           696.0
     

     
     
186814
                           gb|AAF97797.1|AF281148_1
                           (AF281148) NADH dehydrogenase I subunit A [Pseudomonas fluorescens]
                           137
                           84.67
                           91.97
                           0
                           600.0
     

     
     
186813
                           gb|AAO56843.1|
                           (AE016868) NADH dehydrogenase I, A subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           137
                           83.94
                           90.51
                           0
                           602.0
     

     
     
186815
                           gb|AAN69702.1|AE016606_5
                           (AE016789) NADH dehydrogenase I, A subunit [Pseudomonas putida KT2440]
                           137
                           83.21
                           91.24
                           0
                           596.0
     

     






      

          
GC ORFID: 47717How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2637Glimmer Score: 

          
Start: 2354799Stop: 2355212

          
Length: 414


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2637 translation of PA2637Homolog Bit Score 272.0

          
Other Homologs:  psyr_15may02_Scaffold17_revised_gene2764 (ORF: BLASTX 236.0), t_PA1883 (ORF: BLASTX 152.0), t_PA2637 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCAAACCCAGCTGAACTTGCAGCTCATCACTGGGGATTCGCTGCCTTCCTTCTAGGGGTCGTTGGCCTT 
CTCGCCTTCATGCTAGGGGTTTCGTCCCTGCTTGGCAGCAAGGCATTTGGTCGCAGCAAGAACGAACCCTTC 
GAATCCGGGATCGTCCCCACCGGAGGCGCACGCCTGCGTCTCTCGGCAAAATTCTATCTGGTCGCGATGCTC 
TTCGTGATCTTCGACGTCGAAGCCCTCTTCCTCTTCGCCTGGTCGGTGTCGGTTCGCGAAAGCGGCTGGGCC 
GGCCTGATCGAGGCAACCATTTTCATAGCAATTCTGTTGGCGGGTCTTGTCTATCTTTGGCGGATCGGTGCG 
CTCGATTGGGCTCCCGAAAGCCGTCGCAAGCGGCAGGCGAAGCTAAAACAATGA