ViewGene
Locus Name:
GeneID:
Location:

GeneID:4714
TrivialName: PA14_34170
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34170
PAO1 Ortholog Locus:PA2358
Sequence Length:390
Protein Length:129
Start: 3038777
Stop: 3039166
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05746.1|AE004662_1 (AE004662) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/129 (98%), Positives = 127/129 (98%)
Sequence:
ATGCCTCGCTCCGCTCGCCCGTGTCGCTCGCTCCCGGTAGCCGCTTTCCCGGCCGCGCCGAGTCCGCCTGGT
CCTCCAGTCACAGCAACCTTGGTTTCCCGACCCGGCGAAGAGGATCGCTGCATGCCGTACTGTTCGCCGGAA
CAACTCGCCGACCTCGGCCCGCTGCTGGATTGCCTGCGCCGCTGGCCGCGCATCCGCGAGCCGCGGCCGGGG
GTGTTCTACCTGGGCGACCAGCCGTTCTGCCAGTTCCATTCGCGCAATGGCCAGCGCTGGGCCGACGTCAAG
CGCCGCAAGGGGCGCCTGCCGCCGTTCGTCCTGCCACCGGGCGACCAGCATTCGGCGCGGGCATTCCAGATA
TTCCTGCTCCAGGCCTACAAGCTGAACTGA
Translation:
MPRSARPCRSLPVAAFPAAPSPPGPPVTATLVSRPGEEDRCMPYCSPEQLADLGPLLDCLRRWPRIREPRPG
VFYLGDQPFCQFHSRNGQRWADVKRRKGRLPPFVLPPGDQHSARAFQIFLLQAYKLN*
AnnotationID:4719GeneID:4714
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2358
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9429




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26569




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4714
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7083
                           PA2358_tr
                           translation of PA2358
                           129
                           98.44
                           98.44
                           0
                           695.0
     

     
     
186811
                           gb|AAG05746.1|AE004662_1
                           (AE004662) hypothetical protein PA2358 [Pseudomonas aeruginosa PAO1]
                           129
                           98.44
                           98.44
                           0
                           695.0
     

     






      

          
GC ORFID: 47716How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2358Glimmer Score: 

          
Start: 1915139Stop: 1914750

          
Length: 390


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2358 translation of PA2358Homolog Bit Score 272.0

          
Other Homologs:  

          
GC ORF Sequence

           
ATGCCTCGCTCCGCTCGCCCGTGTCGCTCGCTCCCGGTAGCCGCTTTCCCGGCCGCGCCGAGTCCGCCTGGT 
CCTCCAGTCACAGCAACCTTGGTTTCCCGACCCGGCGAAGAGGATCGCTGCATGCCGTACTGTTCGCCGGAA 
CAACTCGCCGACCTCGGCCCGCTGCTGGATTGCCTGCGCCGCTGGCCGCGCATCCGCGAGCCGCGGCCGGGG 
GTGTTCTACCTGGGCGACCAGCCGTTCTGCCAGTTCCATTCGCGCAATGGCCAGCGCTGGGCCGACGTCAAG 
CGCCGCAAGGGGCGCCTGCCGCCGTTCGTCCTGCCACCGGGCGACCAGCATTCGGCGCGGGCATTCCAGATA 
TTCCTGCTCCAGGCCTACAAGCTGAACTGA