ViewGene
Locus Name:
GeneID:
Location:

GeneID:4713
TrivialName: PA14_53270
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53270
PAO1 Ortholog Locus:PA0850
Sequence Length:420
Protein Length:139
Start: 4722520
Stop: 4722101
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04239.1|AE004520_2 (AE004520) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 139/139 (100%), Positives = 139/139 (100%)
Sequence:
ATGTTTCTCAGCCCTAGCGCGATCTGCCTGCTCGGCCTGATCGCCTGGACCCTGTTGCTGGTCTTCCTGCTG
GTCAGCCAGCGCGGCCTGCTGGTACTCGGCGGGCGGATGGCGGTGAACGCCTTCGCCGCCGATGGCAGCAAC
ACGCCTGGCGGTTTCGGCCAGCGGCTGGTGCGAGTCCATGCCAACTGCGTGGAGAACCTGCCGCTGCTGGCC
GGCGCGCTGCTCTACGCGATCGCCAGCGGGCAGAGCAGCCTGACCGACCCGTTGGCGCCACTGGTGCTCGGC
GCCCGGCTGTTCCAATCGCTGATGCACCTGGTCAGCACCTCCGCGCTGTTCGTCTGGCTGCGTTTCGCCGGC
TTCTTCGTGCAGTTGCTGGTGCTCGCCTGGTGGCTGCTGCTCCTCGCGGGGCTGGCCTAG
Translation:
MFLSPSAICLLGLIAWTLLLVFLLVSQRGLLVLGGRMAVNAFAADGSNTPGGFGQRLVRVHANCVENLPLLA
GALLYAIASGQSSLTDPLAPLVLGARLFQSLMHLVSTSALFVWLRFAGFFVQLLVLAWWLLLLAGLA*
AnnotationID:4718GeneID:4713
AnnotatorUID: danlee
Modification Date/Time: 2004-04-30 17:05:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0850
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9427




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26567




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4713
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7082
                           PA0850_tr
                           translation of PA0850
                           139
                           99.99
                           99.99
                           0
                           695.0
     

     
     
186810
                           gb|AAG04239.1|AE004520_2
                           (AE004520) hypothetical protein PA0850 [Pseudomonas aeruginosa PAO1]
                           139
                           99.99
                           99.99
                           0
                           695.0
     

     






      

          
GC ORFID: 47715How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0850Glimmer Score: 

          
Start: 231387Stop: 231806

          
Length: 420


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0850 translation of PA0850Homolog Bit Score 272.0

          
Other Homologs:  t_PA0850 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTTCTCAGCCCTAGCGCGATCTGCCTGCTCGGCCTGATCGCCTGGACCCTGTTGCTGGTCTTCCTGCTG 
GTCAGCCAGCGCGGCCTGCTGGTACTCGGCGGGCGGATGGCGGTGAACGCCTTCGCCGCCGATGGCAGCAAC 
ACGCCTGGCGGTTTCGGCCAGCGGCTGGTGCGAGTCCATGCCAACTGCGTGGAGAACCTGCCGCTGCTGGCC 
GGCGCGCTGCTCTACGCGATCGCCAGCGGGCAGAGCAGCCTGACCGACCCGTTGGCGCCACTGGTGCTCGGC 
GCCCGGCTGTTCCAATCGCTGATGCACCTGGTCAGCACCTCCGCGCTGTTCGTCTGGCTGCGTTTCGCCGGC 
TTCTTCGTGCAGTTGCTGGTGCTCGCCTGGTGGCTGCTGCTCCTCGCGGGGCTGGCCTAG