ViewGene

Locus Name:
GeneID:
Location:

GeneID:4712
TrivialName: PA14_51520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51520
PAO1 Ortholog Locus:
Sequence Length:414
Protein Length:137
Start: 4580960
Stop: 4580547
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP82960.1| (AY273870) SpcU [Pseudomonas aeruginosa]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGATTGATACATGGCTGGCACAGTGGGGCTTGAGACTTCCCTCGAGCAACGATGCCACGTTGCGGCTGCAA
CCGGCAGAGGGACCGGAACTGGTTATGGAGCGCCTCGAGGGCGGTTGGCTTTTCGTCGTCGAGTTGGGACTT
GTGCCTTCAGGGTTACCGCTGGGTGTGATCTTGCAATTGTTACAAGTGAACTCTCCATTCTCATCCTTGGCA
CCGGTGAAACTTGCGGCGGACGATGCCGGTAGACTTGTGCTCTGGGCTGAGGCACGTGATGGCGTTGACGAT
GTGGATGCACTGAACCGCTTGCACGATAGGCTGCGGGAAGGACATTCACGATTAGTGCCATTGCTAGAGCCC
ACGGGTGAGTTGGTTCCAGCTCAGATACAAACCAGCGCGTTAGTGTTCGTTTGA
Translation:
MIDTWLAQWGLRLPSSNDATLRLQPAEGPELVMERLEGGWLFVVELGLVPSGLPLGVILQLLQVNSPFSSLA
PVKLAADDAGRLVLWAEARDGVDDVDALNRLHDRLREGHSRLVPLLEPTGELVPAQIQTSALVFV*
AnnotationID:12GeneID:4712
AnnotatorUID: diggins
Modification Date/Time: 2006-01-25 06:06:56
Gene Name:spcU
Confidence Code:1
GeneProduct:SpcU
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:Chaperone of the ExoU
Functional Category:(9) Chaperones & heat shock proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9425
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26565
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32079
Author/Investigator(s): Finck-Barbancon V, Goranson J, Zhu L, Sawa T, Wiener-Kronish JP, Fleiszig SM, Wu C, Mende-Mueller L, Frank DW.
Title: ExoU expression by Pseudomonas aeruginosa correlates with acute cytotoxicity and epithelial injury.
PubMed: 9302017
MedLine:
Source:
Mol Microbiol. 1997 Aug;25(3):547-57.
Reference Type:Journal
Data:
URL:
ReferenceID:38267
Author/Investigator(s): Finck-Barbancon V, Yahr TL, Frank DW.
Title: Identification and characterization of SpcU, a chaperone required for efficient secretion of the ExoU cytotoxin.
PubMed: 9829931
MedLine:
Source:
J Bacteriol. 1998 Dec;180(23):6224-31.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.gov/articlerender.fcgi?tool=pubmed&pubmedid=9829931
Homologs By Global Alignment
Gene ID:4712

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
186808 gb|AAP82960.1| (AY273870) SpcU [Pseudomonas aeruginosa] 137 99.99 99.99 0 697.0
186809 gb|AAC16024.1| (U97065) SpcU [Pseudomonas aeruginosa] 137 99.99 99.99 0 697.0
GC ORFID: 47714How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_RS15Glimmer Score:
Start: 372947Stop: 373360
Length: 414
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_RS15 spcU 137 Homolog: SpcU / Chaperone of the ExoU; recombination-related / P. aeruginosa / PA103 (AAC16024) translation of RS15Homolog Bit Score 273.0
Other Homologs:
GC ORF Sequence
ATGATTGATACATGGCTGGCACAGTGGGGCTTGAGACTTCCCTCGAGCAACGATGCCACGTTGCGGCTGCAA
CCGGCAGAGGGACCGGAACTGGTTATGGAGCGCCTCGAGGGCGGTTGGCTTTTCGTCGTCGAGTTGGGACTT
GTGCCTTCAGGGTTACCGCTGGGTGTGATCTTGCAATTGTTACAAGTGAACTCTCCATTCTCATCCTTGGCA
CCGGTGAAACTTGCGGCGGACGATGCCGGTAGACTTGTGCTCTGGGCTGAGGCACGTGATGGCGTTGACGAT
GTGGATGCACTGAACCGCTTGCACGATAGGCTGCGGGAAGGACATTCACGATTAGTGCCATTGCTAGAGCCC
ACGGGTGAGTTGGTTCCAGCTCAGATACAAACCAGCGCGTTAGTGTTCGTTTGA