ViewGene
Locus Name:
GeneID:
Location:

GeneID:4711
TrivialName: PA14_06200
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06200
PAO1 Ortholog Locus:PA0474
Sequence Length:405
Protein Length:134
Start: 547884
Stop: 548288
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03863.1|AE004485_4 (AE004485) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/134 (99%), Positives = 133/134 (99%)
Sequence:
GTGATGAACGTCCCCGAAGGGTTCCAGCCGCTGTTCCGCAGCAGTCCGTTGCTCGACCTGCTCGGTCCTTTC
TTCTGCCGGCACGACGCCCAGCGCCAGTTGGTGGTGGCGCTGCGCATCGACGAAAAGCACTGCAACCACGGT
GGCACCGCCCACGGCGGCCTGCTCTCGACCCTGGCCGACGTTGGCCTCGGCTACGCCATGGCGTTCTCCCGC
GAACCGCCGCAGCCGATGGTCACCGTCGGCCTGCGCCTGGACTTCTGCGGGGTCGCGCGGGTCGGCGACTGG
CTGGAGGTGCATACCCGGGTCGACAAGCTCGGCCAGCGCATGGCCTTCGCCTCGGCCCGGCTGCACAGCGGC
GAGCGCCTGGTGGCCAGCGCCAGCGGCGTGTTTCATCTGCCCTGA
Translation:
MMNVPEGFQPLFRSSPLLDLLGPFFCRHDAQRQLVVALRIDEKHCNHGGTAHGGLLSTLADVGLGYAMAFSR
EPPQPMVTVGLRLDFCGVARVGDWLEVHTRVDKLGQRMAFASARLHSGERLVASASGVFHLP*
AnnotationID:4717GeneID:4711
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 09:09:37
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA0474
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050,pfam03061
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG2050, PaaI, Uncharacterized protein, possibly involved in 
aromatic compounds catabolism 
[Secondary metabolites biosynthesis, transport, and catabolism]
CD-Length = 141 residues,  95.0% aligned
Score = 86.3 bits (213), Expect = 1e-18

pfam03061, 4HBT, Thioesterase superfamily.
CD-Length = 78 residues, 100.0% aligned
Score = 52.6 bits (126), Expect = 2e-08
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 1/79 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:15166




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26563




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33786




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4711_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4711
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7081
                           PA0474_tr
                           translation of PA0474
                           134
                           99.25
                           99.25
                           0
                           698.0
     

     
     
186807
                           gb|AAG03863.1|AE004485_4
                           (AE004485) hypothetical protein PA0474 [Pseudomonas aeruginosa PAO1]
                           134
                           98.50
                           99.25
                           0
                           695.0
     

     






      

          
GC ORFID: 47713How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0474Glimmer Score: 

          
Start: 6349226Stop: 6349630

          
Length: 405


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0474 translation of PA0474Homolog Bit Score 273.0

          
Other Homologs:  t_PA0474 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGATGAACGTCCCCGAAGGGTTCCAGCCGCTGTTCCGCAGCAGTCCGTTGCTCGACCTGCTCGGTCCTTTC 
TTCTGCCGGCACGACGCCCAGCGCCAGTTGGTGGTGGCGCTGCGCATCGACGAAAAGCACTGCAACCACGGT 
GGCACCGCCCACGGCGGCCTGCTCTCGACCCTGGCCGACGTTGGCCTCGGCTACGCCATGGCGTTCTCCCGC 
GAACCGCCGCAGCCGATGGTCACCGTCGGCCTGCGCCTGGACTTCTGCGGGGTCGCGCGGGTCGGCGACTGG 
CTGGAGGTGCATACCCGGGTCGACAAGCTCGGCCAGCGCATGGCCTTCGCCTCGGCCCGGCTGCACAGCGGC 
GAGCGCCTGGTGGCCAGCGCCAGCGGCGTGTTTCATCTGCCCTGA