ViewGene
Locus Name:
GeneID:
Location:

GeneID:4710
TrivialName: PA14_03090
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_03090
PAO1 Ortholog Locus:PA0250
Sequence Length:435
Protein Length:144
Start: 272559
Stop: 272125
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03639.1|AE004463_4 (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/144 (99%), Positives = 143/144 (99%)
Sequence:
ATGAAAACCGTGGCACAACTGTTGAACGCCAAGCAGAACCAGCAGGTGTACACCATCGGACCGGACGAGATG
GTGCTCGACGCCCTGCGCCTGATGGCGGAAAAGAACATCGGCGCGCTGCTGGTGGTGAACCATGGCGAGGTG
GTCGGGGTGGTCAGCGAGCGCGACTACGCGCGCAAGATGGTCCTCAAGGGCCGTTCGTCCATCGGTACGCCG
ATCAGCGCGATCATGAGCGCGCCGGTGGTCAGCGTGGACTCGAAGCAGAGCGTCGACACCTGCATGAACCTG
ATGACCGATCGCCACCTGCGCCACCTGCCGGTCGTGGAAGACGGCCAGTTGCTCGGCCTGCTGTCCATCGGC
GACCTGGTCAAGGCGGCGATCGCCGAGCAGGCCGAGCTGATCCAGCAACTGGAACAGTACATCCGCGGCGAC
TGA
Translation:
MKTVAQLLNAKQNQQVYTIGPDEMVLDALRLMAEKNIGALLVVNHGEVVGVVSERDYARKMVLKGRSSIGTP
ISAIMSAPVVSVDSKQSVDTCMNLMTDRHLRHLPVVEDGQLLGLLSIGDLVKAAIAEQAELIQQLEQYIRGD
*
AnnotationID:4716GeneID:4710
AnnotatorUID: diggins
Modification Date/Time: 2005-03-23 19:07:35
Gene Name:
Confidence Code:4
GeneProduct:putative CBS domain
Cell Localization:()
Synonyms:PA0250
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0517
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56124.1| (AE016865) CBS domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 146

 Score =  222 bits (565), Expect = 5e-58
 Identities = 115/146 (78%), Positives = 131/146 (89%), Gaps = 2/146 (1%)

>gb|AAN65835.1|AE016212_1 (AE016774) CBS domain protein [Pseudomonas putida KT2440]
          Length = 145

 Score =  209 bits (531), Expect = 5e-54
 Identities = 107/145 (73%), Positives = 125/145 (86%), Gaps = 1/145 (0%)






 
Structural Features:
COG0517, COG0517, FOG: CBS domain 
CD-Length = 117 residues,  94.0% aligned
Score = 63.0 bits (152), Expect = 1e-11
Identities = 43/112 (38%), Positives = 73/112 (65%), Gaps = 5/112 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9421




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26561




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33606




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4710_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4710
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7080
                           PA0250_tr
                           translation of PA0250
                           144
                           99.30
                           99.30
                           0
                           698.0
     

     
     
186797
                           gb|AAG03639.1|AE004463_4
                           (AE004463) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           144
                           99.30
                           99.30
                           0
                           698.0
     

     
     
186798
                           gb|AAO56124.1|
                           (AE016865) CBS domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           146
                           78.76
                           89.72
                           2
                           567.0
     

     
     
186799
                           gb|AAN65835.1|AE016212_1
                           (AE016774) CBS domain protein [Pseudomonas putida KT2440]
                           145
                           73.79
                           86.20
                           1
                           533.0
     

     
     
186801
                           gb|AAM37890.1|
                           (AE011946) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           144
                           53.47
                           72.22
                           2
                           369.0
     

     






      

          
GC ORFID: 47712How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0250Glimmer Score: 

          
Start: 6073900Stop: 6073466

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0250 translation of PA0250Homolog Bit Score 273.0

          
Other Homologs:  psyr_15may02_Scaffold13_revised_gene2153 (ORF: BLASTX 216.0), t_PA0250 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACCGTGGCACAACTGTTGAACGCCAAGCAGAACCAGCAGGTGTACACCATCGGACCGGACGAGATG 
GTGCTCGACGCCCTGCGCCTGATGGCGGAAAAGAACATCGGCGCGCTGCTGGTGGTGAACCATGGCGAGGTG 
GTCGGGGTGGTCAGCGAGCGCGACTACGCGCGCAAGATGGTCCTCAAGGGCCGTTCGTCCATCGGTACGCCG 
ATCAGCGCGATCATGAGCGCGCCGGTGGTCAGCGTGGACTCGAAGCAGAGCGTCGACACCTGCATGAACCTG 
ATGACCGATCGCCACCTGCGCCACCTGCCGGTCGTGGAAGACGGCCAGTTGCTCGGCCTGCTGTCCATCGGC 
GACCTGGTCAAGGCGGCGATCGCCGAGCAGGCCGAGCTGATCCAGCAACTGGAACAGTACATCCGCGGCGAC 
TGA