ViewGene
Locus Name:
GeneID:
Location:

GeneID:471
TrivialName: PA14_16890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16890
PAO1 Ortholog Locus:PA3670
Sequence Length:1848
Protein Length:615
Start: 1447684
Stop: 1449531
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07058.1|AE004786_10 (AE004786) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 615/615 (100%), Positives = 615/615 (100%)
Sequence:
ATGAAACGCGTGTTGTCCTCTGGCGCCGGGCTGTTGCTGATCGCGCTGGCGTTCCTGGCCTTCAACATGGTC
TCCGGCCTGCTGTTCAGCGGCGCGCGGCTCGACCTGACCGAGCAGAAGCTCTACACCATCAGCCCCGGCACC
AAGCGGATCCTGGCCGGCCTCGACGAGCCGATCAACCTGTACTTCTTCTATTCGGATAGCGGTGCCCGGGAA
CTGGTGCCGCTGCGCAACTACGCCAGGCGCGTCGAGGAACTGCTGCGCGCCTACGAGCGCGAGGCGAACGGC
AGGATTCGCCTGCAGGTGATCGATCCCGAGCCGTTCTCCGAGAACGAGGACAAGGCCACCGAGTTCGGCCTG
CAAGGAATTCCCCTGCAGCAGGGCGGCGACAACCTGTACTTCGGCCTGGCCGGCAGCAACGCCCTGGACGGA
GTCCAGGTCATACCCTTCTTCCCGCTCGATCAGGAGGAGTTCCTCGAATACGACATCAGCCGCCTGGTGCAG
ACCCTGGCACAGCCGCAGCGGCCGGTGGTAGGCCTGATGTCGTCGCTGCCGCTCAATGGCGGCTTCGACATG
GCCAGCCGGCAGCCGACCTCGCCGTGGATGGTCATGGAGGAAATCCGCCAGCAATTCGACCTGCGCAGCCTC
AAGAGCGATGCCACGGAAATCCCGCCGGAGGTCTCGGTGCTGCTGCTGGTGCATCCCAAGCAGTTACCCGAG
CAGACGCTATACGCCATCGACCAGTTCGTCCTGCGCGGGGGCAAGCTGCTGGCGTTCGTCGACCCCTTCAGC
GAGGCCGACAGCGGCAGCGATTTCGCCGCTACGCTGGATGGCGACAAGTCGTCCGACCTCGCGCCGCTGTTC
GAGGCCTGGGGGCTGCGCCTGCTGCCGGGCAAGGTGCTCGGCGACGGCGCCTATGCGATGTCCATCAGTCTT
GGCCGGGACCAGCGTCCGGCCCGGCATCCGGCCTGGCTCAGCTTGCCGCGCGAGGCGCTGGACCAGGACGAC
ATCGCCACTGCCGGCCTGGAAAGCCTGACCCTGGCGACGCCCGGCATCCTCGAAAGGCTCCCCGGAGCGAGC
ACCAGCTTCACGCCTTTGCTGCAAAGCTCGGCCCAGGCGATGCCGTTCGATGCCTCGCGCTTCGGCCTGCTG
CGCGACCCCGGCGATCTGATGCGCGAGCTGCGCCCGAGCGGCCGGCGGCATACTCTCGCCGCCCGTATCCAG
GGGCCGGCGAAGAGTGCCTTCGCGGAGGGCATCGAGGGGCATCGCGAAGGCCTGAAGGAGGCGCGCAACATC
AATGTCATCGTCGTGGCCGATACCGACCTGCTCAGCGATCGCATGTGGGTCCAGGTGCAGGACTTCTTCGGC
CAGCGCGTGCCGCAGCCCTGGGCCGACAACGGCGCGCTGGTGGTCAACGCGCTGGACAACCTGTCGGGCACC
GACGCGCTGATCAGCGTGCGCTCCCGCGGCCGGTTCAGCCGGCCGTTCGTGGTGGTCGAGCGCCTGCAGCGC
GAGGCCGAGACGAGCTTCCGGCAGAAGGAGGAGCAGCTCAAGCAGCGCCTCGCCGATACCGAGCAGCAACTC
GCCGCCCTACAGCAGGGTGCCGACCCGGAGAAGGCCGTCGAACTGACGCCCGAACAGCAGGCCACGGTGCGC
CAGTACATGCAGGAGAAGCTGCGCATCCGCAAGGAGCTGCGCGAGGTGCAGTACCAGTTGAACGCCGATATC
GACGCACTGGGCCGCACCCTGAAGCTGGTCAATATCGCCCTGGTTCCCTCGTTGCTCACGGTCGGCGTGCTG
CTCGGCTGGCTCTGGCGGCGCCGGCGCATGGCCCGGGGAGGGCATTGA
Translation:
MKRVLSSGAGLLLIALAFLAFNMVSGLLFSGARLDLTEQKLYTISPGTKRILAGLDEPINLYFFYSDSGARE
LVPLRNYARRVEELLRAYEREANGRIRLQVIDPEPFSENEDKATEFGLQGIPLQQGGDNLYFGLAGSNALDG
VQVIPFFPLDQEEFLEYDISRLVQTLAQPQRPVVGLMSSLPLNGGFDMASRQPTSPWMVMEEIRQQFDLRSL
KSDATEIPPEVSVLLLVHPKQLPEQTLYAIDQFVLRGGKLLAFVDPFSEADSGSDFAATLDGDKSSDLAPLF
EAWGLRLLPGKVLGDGAYAMSISLGRDQRPARHPAWLSLPREALDQDDIATAGLESLTLATPGILERLPGAS
TSFTPLLQSSAQAMPFDASRFGLLRDPGDLMRELRPSGRRHTLAARIQGPAKSAFAEGIEGHREGLKEARNI
NVIVVADTDLLSDRMWVQVQDFFGQRVPQPWADNGALVVNALDNLSGTDALISVRSRGRFSRPFVVVERLQR
EAETSFRQKEEQLKQRLADTEQQLAALQQGADPEKAVELTPEQQATVRQYMQEKLRIRKELREVQYQLNADI
DALGRTLKLVNIALVPSLLTVGVLLGWLWRRRRMARGGH*
AnnotationID:480GeneID:471
AnnotatorUID: diggins
Modification Date/Time: 2005-06-19 09:09:02
Gene Name:
Confidence Code:3
GeneProduct:putative auxiliary component of ABC transporter
Cell Localization:()
Synonyms:PA3670
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(16) Motility & Attachment
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3225
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3225, GldG, ABC-type uncharacterized transport system involved 
in gliding motility, auxiliary component 
[Cell motility and secretion]
CD-Length = 538 residues, 100.0% aligned
Score =  560 bits (1445), Expect = 3e-160
Identities = 240/617 (38%), Positives = 303/617 (49%), Gaps = 87/617 (14%)







   
Genomic Context:






   
Comment:


















    ReferenceID:945




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18087




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31875




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:471_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:471
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
817
                           PA3670_tr
                           translation of PA3670
                           615
                           99.99
                           99.99
                           0
                           3108.0
     

     
     
34339
                           gb|AAG07058.1|AE004786_10
                           (AE004786) hypothetical protein PA3670 [Pseudomonas aeruginosa PAO1]
                           615
                           99.99
                           99.99
                           0
                           3108.0
     

     
     
818
                           PA4039_tr
                           translation of PA4039
                           619
                           53.47
                           68.98
                           23
                           1595.0
     

     
     
34340
                           gb|AAG07426.1|AE004820_11
                           (AE004820) hypothetical protein PA4039 [Pseudomonas aeruginosa PAO1]
                           619
                           53.47
                           68.98
                           23
                           1595.0
     

     






      

          
GC ORFID: 43473How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3670Glimmer Score: 

          
Start: 3506253Stop: 3504406

          
Length: 1848


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3670 translation of PA3670Homolog Bit Score 1201.0

          
Other Homologs:  t_PA4039 (ORF: BLASTX 613.0), t_PA3670 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAACGCGTGTTGTCCTCTGGCGCCGGGCTGTTGCTGATCGCGCTGGCGTTCCTGGCCTTCAACATGGTC 
TCCGGCCTGCTGTTCAGCGGCGCGCGGCTCGACCTGACCGAGCAGAAGCTCTACACCATCAGCCCCGGCACC 
AAGCGGATCCTGGCCGGCCTCGACGAGCCGATCAACCTGTACTTCTTCTATTCGGATAGCGGTGCCCGGGAA 
CTGGTGCCGCTGCGCAACTACGCCAGGCGCGTCGAGGAACTGCTGCGCGCCTACGAGCGCGAGGCGAACGGC 
AGGATTCGCCTGCAGGTGATCGATCCCGAGCCGTTCTCCGAGAACGAGGACAAGGCCACCGAGTTCGGCCTG 
CAAGGAATTCCCCTGCAGCAGGGCGGCGACAACCTGTACTTCGGCCTGGCCGGCAGCAACGCCCTGGACGGA 
GTCCAGGTCATACCCTTCTTCCCGCTCGATCAGGAGGAGTTCCTCGAATACGACATCAGCCGCCTGGTGCAG 
ACCCTGGCACAGCCGCAGCGGCCGGTGGTAGGCCTGATGTCGTCGCTGCCGCTCAATGGCGGCTTCGACATG 
GCCAGCCGGCAGCCGACCTCGCCGTGGATGGTCATGGAGGAAATCCGCCAGCAATTCGACCTGCGCAGCCTC 
AAGAGCGATGCCACGGAAATCCCGCCGGAGGTCTCGGTGCTGCTGCTGGTGCATCCCAAGCAGTTACCCGAG 
CAGACGCTATACGCCATCGACCAGTTCGTCCTGCGCGGGGGCAAGCTGCTGGCGTTCGTCGACCCCTTCAGC 
GAGGCCGACAGCGGCAGCGATTTCGCCGCTACGCTGGATGGCGACAAGTCGTCCGACCTCGCGCCGCTGTTC 
GAGGCCTGGGGGCTGCGCCTGCTGCCGGGCAAGGTGCTCGGCGACGGCGCCTATGCGATGTCCATCAGTCTT 
GGCCGGGACCAGCGTCCGGCCCGGCATCCGGCCTGGCTCAGCTTGCCGCGCGAGGCGCTGGACCAGGACGAC 
ATCGCCACTGCCGGCCTGGAAAGCCTGACCCTGGCGACGCCCGGCATCCTCGAAAGGCTCCCCGGAGCGAGC 
ACCAGCTTCACGCCTTTGCTGCAAAGCTCGGCCCAGGCGATGCCGTTCGATGCCTCGCGCTTCGGCCTGCTG 
CGCGACCCCGGCGATCTGATGCGCGAGCTGCGCCCGAGCGGCCGGCGGCATACTCTCGCCGCCCGTATCCAG 
GGGCCGGCGAAGAGTGCCTTCGCGGAGGGCATCGAGGGGCATCGCGAAGGCCTGAAGGAGGCGCGCAACATC 
AATGTCATCGTCGTGGCCGATACCGACCTGCTCAGCGATCGCATGTGGGTCCAGGTGCAGGACTTCTTCGGC 
CAGCGCGTGCCGCAGCCCTGGGCCGACAACGGCGCGCTGGTGGTCAACGCGCTGGACAACCTGTCGGGCACC 
GACGCGCTGATCAGCGTGCGCTCCCGCGGCCGGTTCAGCCGGCCGTTCGTGGTGGTCGAGCGCCTGCAGCGC 
GAGGCCGAGACGAGCTTCCGGCAGAAGGAGGAGCAGCTCAAGCAGCGCCTCGCCGATACCGAGCAGCAACTC 
GCCGCCCTACAGCAGGGTGCCGACCCGGAGAAGGCCGTCGAACTGACGCCCGAACAGCAGGCCACGGTGCGC 
CAGTACATGCAGGAGAAGCTGCGCATCCGCAAGGAGCTGCGCGAGGTGCAGTACCAGTTGAACGCCGATATC 
GACGCACTGGGCCGCACCCTGAAGCTGGTCAATATCGCCCTGGTTCCCTCGTTGCTCACGGTCGGCGTGCTG 
CTCGGCTGGCTCTGGCGGCGCCGGCGCATGGCCCGGGGAGGGCATTGA