ViewGene
Locus Name:
GeneID:
Location:

GeneID:4708
TrivialName: PA14_73230
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73230
PAO1 Ortholog Locus:PA5553
Sequence Length:426
Protein Length:141
Start: 6521492
Stop: 6521067
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08938.1|AE004967_9 (AE004967) ATP synthase epsilon chain [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGGCCATAACAGTCCATTGCGACATCGTCAGCGCCGAGGCGGAGATCTTCTCCGGCCTGGTCGAGATGGTT
ATCGCGCACGGCGCTCTGGGTGACCTGGGTATCGCCCCGGGCCACGCGCCGCTGATCACCGACCTGAAACCG
GGCCCCATCCGCCTGGTCAAGCAGGGCGGCGAGCAGGAGGTGTACTACATCTCCGGCGGTTTCCTCGAAGTC
CAGCCGAACATGGTCAAGGTCCTCGCCGACACCGTGGTTCGTGCCGGCGACCTCGACGAAGCGGCCGCCCAG
GAAGCCCTGAAGGCTGCCGAAAAGGCGCTGCAGGGCAAGGGCGCCGAGTTCGACTACAGCGCCGCTGCCGCG
CGTCTGGCCGAAGCCGCAGCCCAGCTGCGCACCGTCCAGCAACTGCGCAAGAAGTTCGGCGGCTGA
Translation:
MAITVHCDIVSAEAEIFSGLVEMVIAHGALGDLGIAPGHAPLITDLKPGPIRLVKQGGEQEVYYISGGFLEV
QPNMVKVLADTVVRAGDLDEAAAQEALKAAEKALQGKGAEFDYSAAAARLAEAAAQLRTVQQLRKKFGG*
AnnotationID:4714GeneID:4708
AnnotatorUID: danlee
Modification Date/Time: 2004-02-05 18:06:45
Gene Name:atpC
Confidence Code:2
GeneProduct:ATP synthase epsilon chain
Cell Localization:()
Synonyms:uncC, papG
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(12) Energy metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0355
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9417




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17035




  
Author/Investigator(s):
        





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:
NCBI - Conserved Domain Search (BLASTP).






    
Reference Type:Blast (text/plain)







    
Data:PA5553_CDS.cgi


    		




 
URL:

















    ReferenceID:26557




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35560




  
Author/Investigator(s):
        Clark MA, Baumann L, Baumann P.





  
Title:
        Sequence analysis of a 34.7-kb DNA segment from the genome of Buchnera aphidicola (endosymbiont of aphids) containing groEL, dnaA, the atp operon, gidA, and rho.




  
PubMed:
        9516544


MedLine:
        




    
Source:
Curr Microbiol. 1998 Mar;36(3):158-63.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9516544









           
Homologs By Global Alignment 

           

       



     
Gene ID:4708
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7078
                           PA5553_tr
                           translation of PA5553
                           141
                           99.99
                           99.99
                           0
                           698.0
     

     
     
186731
                           gb|AAG08938.1|AE004967_9
                           (AE004967) ATP synthase epsilon chain [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           698.0
     

     
     
186732
                           gb|AAO59011.1|
                           (AE016876) ATP synthase F1, epsilon subunit [Pseudomonas syringae pv. tomato str. DC3000]
                           141
                           85.10
                           91.48
                           2
                           610.0
     

     
     
186733
                           gb|AAN70976.1|AE016742_5
                           (AE016794) ATP synthase F1, epsilon subunit [Pseudomonas putida KT2440]
                           142
                           83.80
                           88.02
                           4
                           580.0
     

     
     
186734
                           gb|AAO91436.1|
                           (AE016966) ATP synthase F1, epsilon subunit [Coxiella burnetii RSA 493]
                           142
                           55.63
                           71.12
                           1
                           383.0
     

     






      

          
GC ORFID: 47710How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5553Glimmer Score: 

          
Start: 5785181Stop: 5784756

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5553 translation of PA5553Homolog Bit Score 273.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4133 (ORF: BLASTX 240.0), t_PA5553 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCATAACAGTCCATTGCGACATCGTCAGCGCCGAGGCGGAGATCTTCTCCGGCCTGGTCGAGATGGTT 
ATCGCGCACGGCGCTCTGGGTGACCTGGGTATCGCCCCGGGCCACGCGCCGCTGATCACCGACCTGAAACCG 
GGCCCCATCCGCCTGGTCAAGCAGGGCGGCGAGCAGGAGGTGTACTACATCTCCGGCGGTTTCCTCGAAGTC 
CAGCCGAACATGGTCAAGGTCCTCGCCGACACCGTGGTTCGTGCCGGCGACCTCGACGAAGCGGCCGCCCAG 
GAAGCCCTGAAGGCTGCCGAAAAGGCGCTGCAGGGCAAGGGCGCCGAGTTCGACTACAGCGCCGCTGCCGCG 
CGTCTGGCCGAAGCCGCAGCCCAGCTGCGCACCGTCCAGCAACTGCGCAAGAAGTTCGGCGGCTGA