ViewGene

Locus Name:
GeneID:
Location:

GeneID:4707
TrivialName: PA14_08920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08920
PAO1 Ortholog Locus:PA4256
Sequence Length:414
Protein Length:137
Start: 763287
Stop: 763700
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07644.1|AE004841_22 (AE004841) 50S ribosomal protein L16 [Pseudomonas aeruginosa PAO1]
Identities = 137/137 (100%), Positives = 137/137 (100%)
Sequence:
ATGCTGCAACCCAAGCGTACGAAGTTCCGCAAACAAATGACCGGCCACAACCGTGGTCTGGCTCATCGTGGT
AGTAAGGTCAGCTTCGGTGAGTACGCACTGAAGGCCACTAGCCGTGGCCGCCTTACTGCTCGTCAGATCGAG
TCCGCGCGTCGTGCGCTGACCCGTCACGTGAAGCGTGGCGGCAAGATCTGGATCCGCGTATTCCCTGACAAG
CCTGTCACCAAGAAGCCCCTCGAAGTTCGTATGGGTAAAGGTAAGGGTGGGGTCGAGTACTGGGTAGCCCAG
ATCCAGCCGGGCAAGGTCCTGTACGAGATCGAGGGTGTTTCCGAAGAGCTGGCGCGTGAGGCTTTCGCCCTG
GCTGCTGCAAAGCTGCCCCTCGCCACCTCCTTTGTTAAGCGGACGGTGATGTGA
Translation:
MLQPKRTKFRKQMTGHNRGLAHRGSKVSFGEYALKATSRGRLTARQIESARRALTRHVKRGGKIWIRVFPDK
PVTKKPLEVRMGKGKGGVEYWVAQIQPGKVLYEIEGVSEELAREAFALAAAKLPLATSFVKRTVM*
AnnotationID:4713GeneID:4707
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 11:11:05
Gene Name:rplP
Confidence Code:2
GeneProduct:50S ribosomal protein L16
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00252,COG0197
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66091.1|AE016238_9 (AE016775) ribosomal protein L16 [Pseudomonas putida KT2440]
          Length = 137

 Score =  259 bits (663), Expect = 1e-69
 Identities = 130/137 (94%), Positives = 134/137 (97%)

>gb|AAO54175.1| (AE016858) ribosomal protein L16 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 137

 Score =  259 bits (662), Expect = 2e-69
 Identities = 130/137 (94%), Positives = 134/137 (97%)

>gb|AAN53323.1|AE015473_10 (AE015473) ribosomal protein L16 [Shewanella oneidensis MR-1]
          Length = 136

 Score =  214 bits (546), Expect = 5e-56
 Identities = 106/137 (77%), Positives = 119/137 (86%), Gaps = 1/137 (0%)
Structural Features:
pfam00252, Ribosomal_L16, Ribosomal protein L16.
CD-Length = 132 residues, 100.0% aligned
Score =  188 bits (478), Expect = 2e-49
Identities = 89/132 (67%), Positives = 108/132 (81%)

COG0197, RplP, Ribosomal protein L16/L10E 
[Translation, ribosomal structure and biogenesis]
CD-Length = 146 residues,  93.2% aligned
Score =  178 bits (453), Expect = 2e-46
Identities = 86/136 (63%), Positives = 103/136 (75%), Gaps = 2/136 (1%)
Genomic Context:
Comment:
ReferenceID:9415
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26555
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36733
Author/Investigator(s): Zurawski G, Zurawski SM.
Title: Structure of the Escherichia coli S10 ribosomal protein operon.
PubMed: 3892488
MedLine:
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.
Reference Type:
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488
ReferenceID:36734
Author/Investigator(s): Zurawski G, Zurawski SM.
Title: Structure of the Escherichia coli S10 ribosomal protein operon.
PubMed: 3892488
MedLine:
Source:
Nucleic Acids Res. 1985 Jun 25;13(12):4521-6.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=3892488
ReferenceID:38088
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4707_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4707

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7077 PA4256_tr translation of PA4256 137 99.99 99.99 0 697.0
186573 gb|AAG07644.1|AE004841_22 (AE004841) 50S ribosomal protein L16 [Pseudomonas aeruginosa PAO1] 137 99.99 99.99 0 697.0
186574 gb|AAN66091.1|AE016238_9 (AE016775) ribosomal protein L16 [Pseudomonas putida KT2440] 137 94.89 97.81 0 663.0
186575 gb|AAO54175.1| (AE016858) ribosomal protein L16 [Pseudomonas syringae pv. tomato str. DC3000] 137 94.89 97.81 0 662.0
186584 dbj|BAA10954.1| (D64071) ribosomal protein L16 [Actinobacillus actinomycetemcomitans] 137 78.10 88.32 1 543.0
GC ORFID: 47709How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4256Glimmer Score:
Start: 4190652Stop: 4190239
Length: 414
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4256 translation of PA4256Homolog Bit Score 273.0
Other Homologs: psyr_15may02_Scaffold4_revised_gene5192 (ORF: BLASTX 259.0), t_PA4256 (ORF: GLIMMER)
GC ORF Sequence
ATGCTGCAACCCAAGCGTACGAAGTTCCGCAAACAAATGACCGGCCACAACCGTGGTCTGGCTCATCGTGGT
AGTAAGGTCAGCTTCGGTGAGTACGCACTGAAGGCCACTAGCCGTGGCCGCCTTACTGCTCGTCAGATCGAG
TCCGCGCGTCGTGCGCTGACCCGTCACGTGAAGCGTGGCGGCAAGATCTGGATCCGCGTATTCCCTGACAAG
CCTGTCACCAAGAAGCCCCTCGAAGTTCGTATGGGTAAAGGTAAGGGTGGGGTCGAGTACTGGGTAGCCCAG
ATCCAGCCGGGCAAGGTCCTGTACGAGATCGAGGGTGTTTCCGAAGAGCTGGCGCGTGAGGCTTTCGCCCTG
GCTGCTGCAAAGCTGCCCCTCGCCACCTCCTTTGTTAAGCGGACGGTGATGTGA