ViewGene
Locus Name:
GeneID:
Location:

GeneID:4702
TrivialName: PA14_67550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67550
PAO1 Ortholog Locus:PA5116
Sequence Length:426
Protein Length:141
Start: 6034403
Stop: 6034828
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08501.1|AE004924_6 (AE004924) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 141/141 (100%), Positives = 141/141 (100%)
Sequence:
ATGCGGCAACTGGACATAGGCGAGGTCGCGCGACGATCCGGGGTACCGGCCTCGACCCTGCGCTACTACGAG
GAAAAGGGACTGATCGCCTCCAGCGGCCGGCACGGCCTGCGCCGGCTGTTCGATGCAGGCGTGCTGGAGCGG
CTGGCGCTGATCGGGCTGGGCCGCGCCGCCGGGTTGTCGCTGGACGAGATTGCCGGCATGGGCGCAGCCGAC
GGCGCGCTGCGGATCGACCGCGCGGCGCTGGCGGCCAAGGCCGACGAACTGGACCGGACGATCCGCCGCCTC
GCCGCCATGCGCGACGGCCTGCGGCATGCCGCGGCCTGTCCGGCGCGCGAGCACATGGACTGCCCGACGTTC
CGCCGCTTGCTGCGGGCCGCTGCCGCGGGGGCCATCAAGCCACGCCGGAAAGCGCCCGGCGCATAG
Translation:
MRQLDIGEVARRSGVPASTLRYYEEKGLIASSGRHGLRRLFDAGVLERLALIGLGRAAGLSLDEIAGMGAAD
GALRIDRAALAAKADELDRTIRRLAAMRDGLRHAAACPAREHMDCPTFRRLLRAAAAGAIKPRRKAPGA*
AnnotationID:4708GeneID:4702
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 08:08:16
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:PA5116
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01108,cd01110,cd00592,cd01109
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAE32862.1| (BX640444) putative regulatory protein [Bordetella bronchiseptica]
          Length = 163

 Score =  162 bits (411), Expect = 2e-40
 Identities = 83/135 (61%), Positives = 102/135 (75%)

>dbj|BAB51838.1| (AP003006) transcriptional regulator [Mesorhizobium loti]
          Length = 157

 Score =  161 bits (407), Expect = 6e-40
 Identities = 83/136 (61%), Positives = 100/136 (73%)

>gb|AAN69853.1|AE016624_4 (AE016790) transcriptional regulator, MerR family [Pseudomonas
           putida KT2440]
          Length = 139

 Score =  144 bits (364), Expect = 6e-35
 Identities = 75/129 (58%), Positives = 96/129 (74%), Gaps = 3/129 (2%)






 
Structural Features:
cd01108, HTH_CueR, Helix-turn-helix transcription regulator CueR.
CD-Length = 126 residues,  96.8% aligned
Score = 72.1 bits (177), Expect = 2e-14

cd01110, HTH_SoxR, Helix-turn-helix transcriptional regulator SoxR.
CD-Length = 137 residues,  97.8% aligned
Score = 66.8 bits (163), Expect = 9e-13

cd00592, HTH_MERR, Helix-turn-helix transcription regulator MERR, N-terminal domain. 
CD-Length = 99 residues, 100.0% aligned
Score = 66.1 bits (161), Expect = 2e-12

cd01109, HTH_YyaN, Helix-turn-helix transcription regulator YyaN. 
CD-Length = 113 residues,  92.9% aligned
Score = 57.9 bits (140), Expect = 4e-10






   
Genomic Context:






   
Comment:


















    ReferenceID:9405




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26545




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34901




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4702_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4702
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7071
                           PA5116_tr
                           translation of PA5116
                           141
                           99.99
                           99.99
                           0
                           700.0
     

     
     
186562
                           gb|AAG08501.1|AE004924_6
                           (AE004924) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           141
                           99.99
                           99.99
                           0
                           700.0
     

     
     
186564
                           emb|CAE36604.1|
                           (BX640427) putative regulatory protein [Bordetella parapertussis]
                           155
                           54.19
                           67.09
                           17
                           408.0
     

     
     
186566
                           gb|AAN69853.1|AE016624_4
                           (AE016790) transcriptional regulator, MerR family [Pseudomonas putida KT2440]
                           145
                           52.41
                           68.27
                           10
                           366.0
     

     
     
186565
                           dbj|BAB51838.1|
                           (AP003006) transcriptional regulator [Mesorhizobium loti]
                           160
                           51.87
                           62.50
                           22
                           403.0
     

     






      

          
GC ORFID: 47704How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5116Glimmer Score: 

          
Start: 5298088Stop: 5298513

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5116 translation of PA5116Homolog Bit Score 274.0

          
Other Homologs:  t_PA5116 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGGCAACTGGACATAGGCGAGGTCGCGCGACGATCCGGGGTACCGGCCTCGACCCTGCGCTACTACGAG 
GAAAAGGGACTGATCGCCTCCAGCGGCCGGCACGGCCTGCGCCGGCTGTTCGATGCAGGCGTGCTGGAGCGG 
CTGGCGCTGATCGGGCTGGGCCGCGCCGCCGGGTTGTCGCTGGACGAGATTGCCGGCATGGGCGCAGCCGAC 
GGCGCGCTGCGGATCGACCGCGCGGCGCTGGCGGCCAAGGCCGACGAACTGGACCGGACGATCCGCCGCCTC 
GCCGCCATGCGCGACGGCCTGCGGCATGCCGCGGCCTGTCCGGCGCGCGAGCACATGGACTGCCCGACGTTC 
CGCCGCTTGCTGCGGGCCGCTGCCGCGGGGGCCATCAAGCCACGCCGGAAAGCGCCCGGCGCATAG