ViewGene
Locus Name:
GeneID:
Location:

GeneID:4701
TrivialName: PA14_11520
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11520
PAO1 Ortholog Locus:PA4046
Sequence Length:420
Protein Length:139
Start: 996479
Stop: 996898
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07433.1|AE004821_6 (AE004821) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 138/139 (99%), Positives = 139/139 (100%)
Sequence:
GTGAGTCGCCAGCAAGCCCGCGGCGCGCTGGGACGCGCCTGGTGGTTGCAACTGGCGTTGGCGCTGTTGCCG
CTGATCCTGGTCGAGTTCTTCCTCGGCGAACTGCAACCCCTTCCCCATGGCCTGGCGATGCCGCTGTTCATC
GCCGCGCTGCTGTCGATGTTCGTCAATCTGCCGCTGTTCGGTGCCTACAAGCGTGGTCTCATCGCCACCCAG
AAAGCGCTGGATACGGCGGAGGAAGCCGCCGCCTGGACCCGCCTGGCGCAGGTGCGCCGCAAGGCCCTGTTC
GGCGCCAGCCTGCCGGCCTGGATCGGCGTGCCGGGTGTGTTCGCCGGGCTCAACGGCGTTGCGCTGATCCTG
CTCGGGATCACCAGCCTGGTGTTGTTCTGGCTCTACCGTATTCCGCGTCAACTCGGTTGA
Translation:
MSRQQARGALGRAWWLQLALALLPLILVEFFLGELQPLPHGLAMPLFIAALLSMFVNLPLFGAYKRGLIATQ
KALDTAEEAAAWTRLAQVRRKALFGASLPAWIGVPGVFAGLNGVALILLGITSLVLFWLYRIPRQLG*
AnnotationID:4707GeneID:4701
AnnotatorUID: urbach
Modification Date/Time: 2004-10-06 14:02:01
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA4046
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:15160




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26543




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4701
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7070
                           PA4046_tr
                           translation of PA4046
                           139
                           99.28
                           99.99
                           0
                           701.0
     

     
     
186559
                           gb|AAG07433.1|AE004821_6
                           (AE004821) hypothetical protein PA4046 [Pseudomonas aeruginosa PAO1]
                           139
                           98.56
                           99.99
                           0
                           698.0
     

     
     
186560
                           gb|AAO54239.1|
                           (AE016858) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           139
                           52.51
                           64.02
                           1
                           339.0
     

     
     
186561
                           gb|AAN66150.1|AE016243_2
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           142
                           50.00
                           65.49
                           6
                           339.0
     

     






      

          
GC ORFID: 47703How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4046Glimmer Score: 

          
Start: 3957458Stop: 3957039

          
Length: 420


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4046 translation of PA4046Homolog Bit Score 274.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5269 (ORF: BLASTX 133.0), t_PA4046 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGAGTCGCCAGCAAGCCCGCGGCGCGCTGGGACGCGCCTGGTGGTTGCAACTGGCGTTGGCGCTGTTGCCG 
CTGATCCTGGTCGAGTTCTTCCTCGGCGAACTGCAACCCCTTCCCCATGGCCTGGCGATGCCGCTGTTCATC 
GCCGCGCTGCTGTCGATGTTCGTCAATCTGCCGCTGTTCGGTGCCTACAAGCGTGGTCTCATCGCCACCCAG 
AAAGCGCTGGATACGGCGGAGGAAGCCGCCGCCTGGACCCGCCTGGCGCAGGTGCGCCGCAAGGCCCTGTTC 
GGCGCCAGCCTGCCGGCCTGGATCGGCGTGCCGGGTGTGTTCGCCGGGCTCAACGGCGTTGCGCTGATCCTG 
CTCGGGATCACCAGCCTGGTGTTGTTCTGGCTCTACCGTATTCCGCGTCAACTCGGTTGA