ViewGene
Locus Name:
GeneID:
Location:

GeneID:470
TrivialName: PA14_06620
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06620
PAO1 Ortholog Locus:PA0507
Sequence Length:1797
Protein Length:598
Start: 576906
Stop: 578702
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03896.1|AE004487_10 (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 597/598 (99%), Positives = 598/598 (100%)
Sequence:
ATGCCGGAATACAAGGCTCCGCTGCGCGACATGCGCTTCCTGATCGATGAGGTATTCGACTTCCATGGGCGC
TACCAGGCGCTCGGCGCCAGCGACGCGACCCCGGACATGGTGGCGGCGATCCTCGATGAAGGGTCGAAATTC
TGCGAACAGGTTCTGGCGCCGCTGAACCGCTCCGGCGACGAAGAGGGCTGCCACTTCGACAACGGCGTGGTG
ACCACGCCCAAGGGTTTCAAGGAAGCCTATGCACAGTACGTCGAGGGTGGCTGGAACGGTGTCGCCAGCGAT
CCCGCGTACGGCGGCCAGGGCCTGCCGCACTCGCTGGGTCTGCTGCTCAGCGAGATGATCGGCTCCAGCAAC
GTCTCCTGGGGCATGTACCCGGGCCTGACCCGCGGCGCCATGTCGGCGATCCACGCCCACGGCAGCCAGGCG
CAGAAGGACCTCTACCTGGCGCGGATGACCGCCGGCACCTGGACCGGCACCATGTGCCTGACCGAGCCGCAC
TGCGGCACCGACCTGGGCATCATCAAGACCCGCGCGGTGCCGAACGCCGACGGCAGCCATGCGATCAGCGGG
ACGAAGATCTTCATCTCCGCCGGCGAGCACGACCTGAGCGAGAACATCGTCCACCTGGTGCTGGCCAAGCTG
CCCGATGCGCCGGCCGGGACCAAGGGTATCTCGCTGTTCATCGTGCCGAAGTTCCTTCCCGACGCCGAAGGT
AACGTGGGCGCGCGCAATGCGGTCTCCTGTGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCGGCCACC
TGTGTGATGAACTTCGACGGCGCCACCGGCTACCTGATCGGCGAGCCGAACAAGGGCCTGCACTGCATGTTC
ACCATGATGAACCACGCCCGCCTGGGCACCGGCATGCAGGGCCTGTGCCTTGGCGAGACCAGTTACCAGGGC
GCCGTGCGCTACGCCCGGGAGCGCTTGCAGATGCGCTCGCTGACCGGGCCGAAGGCGCCGGACAAGCCGGCC
GACCCGATCATCGTGCACCCCGACGTGCGGCGCATGCTGCTGACCATGAAGGCGTTCAACGAGGGCAACCGC
GCGCTGGCTTACTTCACCGCCCAGTTGCTCGACACCGAGCACCTGTCGCAGGACGCCGCCGAGCGCGAGCGG
GCCGCCGACCTGCTGGCCTTCCTGACACCGATCTGCAAGGCCTTCATGACCGAGACCGGGCAGGAGGTGACC
AACCTCGGCATGCAGGTCTACGGCGGCCACGGCTACATCCGCGAGTGGGGCATGGAGCAGTTGGTCCGCGAT
TGTCGCATCGCACAGATCTACGAAGGCACCAACGGCATCCAGGCCCTCGACCTGCTCGGCCGCAAGGTATTG
GGCAGCCAGGGCAAGCTGCTGCGCGGTTTCACCAAACTGGTCCACCAGTTGTGCCAGGCCCAGGCCGAGCAT
CCGCAACTGAAGGGACAGGTCGCGCAACTGGCGGCGCTGAACGCGCAGTGGGGCGAACTGACCCAGCAGGTG
GGCCTGGCGGCGATGAAGAATGCCGACGAAGTGGGCGCCGCCTCGGTGGACTACCTGATGTTCTCCGGCTAC
GTGACCCTGGCCTATTTCTGGTTGCGCATCGCCCTGGTGGCGCGCGAGAAGCTGGATGCCGGCAGCGGCGAG
GCCGCGTTCTACGAAGCCAAGCTGGCCACCGCCGACTTCTACTTCAGTCGCCTGCTGCCGCGCACCGCGGCG
CACGCCGCGGCGATCCAGGCCGGCGCGGCGGGCCTGATGAGCCTGTCGGCGGAGCAGTTTTCGCTCTAG
Translation:
MPEYKAPLRDMRFLIDEVFDFHGRYQALGASDATPDMVAAILDEGSKFCEQVLAPLNRSGDEEGCHFDNGVV
TTPKGFKEAYAQYVEGGWNGVASDPAYGGQGLPHSLGLLLSEMIGSSNVSWGMYPGLTRGAMSAIHAHGSQA
QKDLYLARMTAGTWTGTMCLTEPHCGTDLGIIKTRAVPNADGSHAISGTKIFISAGEHDLSENIVHLVLAKL
PDAPAGTKGISLFIVPKFLPDAEGNVGARNAVSCGSIEHKMGIKASATCVMNFDGATGYLIGEPNKGLHCMF
TMMNHARLGTGMQGLCLGETSYQGAVRYARERLQMRSLTGPKAPDKPADPIIVHPDVRRMLLTMKAFNEGNR
ALAYFTAQLLDTEHLSQDAAERERAADLLAFLTPICKAFMTETGQEVTNLGMQVYGGHGYIREWGMEQLVRD
CRIAQIYEGTNGIQALDLLGRKVLGSQGKLLRGFTKLVHQLCQAQAEHPQLKGQVAQLAALNAQWGELTQQV
GLAAMKNADEVGAASVDYLMFSGYVTLAYFWLRIALVAREKLDAGSGEAAFYEAKLATADFYFSRLLPRTAA
HAAAIQAGAAGLMSLSAEQFSL*
AnnotationID:479GeneID:470
AnnotatorUID: diggins
Modification Date/Time: 2005-03-28 05:05:54
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA0507
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN65999.1|AE016228_12 (AE016775) acyl-CoA dehydrogenase, putative [Pseudomonas putida
           KT2440]
          Length = 601

 Score =  839 bits (2168), Expect = 0.0
 Identities = 409/599 (68%), Positives = 481/599 (80%), Gaps = 1/599 (0%)

>gb|AAO54044.1| (AE016857) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 601

 Score =  815 bits (2105), Expect = 0.0
 Identities = 393/599 (65%), Positives = 478/599 (79%), Gaps = 1/599 (0%)

>emb|CAD14001.1| (AL646059) PUTATIVE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 595

 Score =  711 bits (1836), Expect = 0.0
 Identities = 351/598 (58%), Positives = 442/598 (73%), Gaps = 5/598 (0%)








 
Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues,  99.8% aligned
Score =  477 bits (1228), Expect = 2e-135






   
Genomic Context:






   
Comment:


















    ReferenceID:943




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18085




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33811




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:470_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:470
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
810
                           PA0507_tr
                           translation of PA0507
                           598
                           99.83
                           99.99
                           0
                           3113.0
     

     
     
34287
                           gb|AAG03896.1|AE004487_10
                           (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           598
                           99.83
                           99.99
                           0
                           3113.0
     

     
     
34288
                           gb|AAN65999.1|AE016228_12
                           (AE016775) acyl-CoA dehydrogenase, putative [Pseudomonas putida KT2440]
                           601
                           68.05
                           80.03
                           3
                           2170.0
     

     
     
34289
                           gb|AAG03895.1|AE004487_9
                           (AE004487) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           601
                           66.72
                           80.36
                           3
                           2146.0
     

     
     
811
                           PA0506_tr
                           translation of PA0506
                           601
                           66.72
                           80.36
                           3
                           2146.0
     

     






      

          
GC ORFID: 43472How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0507Glimmer Score: 

          
Start: 6378248Stop: 6380044

          
Length: 1797


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0507 translation of PA0507Homolog Bit Score 1203.0

          
Other Homologs:  t_PA0506 (ORF: BLASTX 830.0), t_PA1284 (ORF: BLASTX 709.0), t_PA0508 (ORF: BLASTX 682.0), t_PA4199 (ORF: BLASTX 662.0), t_PA5187 (ORF: BLASTX 643.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 634.0), t_PA5020 (ORF: BLASTX 397.0), t_PA0507 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCGGAATACAAGGCTCCGCTGCGCGACATGCGCTTCCTGATCGATGAGGTATTCGACTTCCATGGGCGC 
TACCAGGCGCTCGGCGCCAGCGACGCGACCCCGGACATGGTGGCGGCGATCCTCGATGAAGGGTCGAAATTC 
TGCGAACAGGTTCTGGCGCCGCTGAACCGCTCCGGCGACGAAGAGGGCTGCCACTTCGACAACGGCGTGGTG 
ACCACGCCCAAGGGTTTCAAGGAAGCCTATGCACAGTACGTCGAGGGTGGCTGGAACGGTGTCGCCAGCGAT 
CCCGCGTACGGCGGCCAGGGCCTGCCGCACTCGCTGGGTCTGCTGCTCAGCGAGATGATCGGCTCCAGCAAC 
GTCTCCTGGGGCATGTACCCGGGCCTGACCCGCGGCGCCATGTCGGCGATCCACGCCCACGGCAGCCAGGCG 
CAGAAGGACCTCTACCTGGCGCGGATGACCGCCGGCACCTGGACCGGCACCATGTGCCTGACCGAGCCGCAC 
TGCGGCACCGACCTGGGCATCATCAAGACCCGCGCGGTGCCGAACGCCGACGGCAGCCATGCGATCAGCGGG 
ACGAAGATCTTCATCTCCGCCGGCGAGCACGACCTGAGCGAGAACATCGTCCACCTGGTGCTGGCCAAGCTG 
CCCGATGCGCCGGCCGGGACCAAGGGTATCTCGCTGTTCATCGTGCCGAAGTTCCTTCCCGACGCCGAAGGT 
AACGTGGGCGCGCGCAATGCGGTCTCCTGTGGCTCCATCGAGCACAAGATGGGGATCAAGGCCTCGGCCACC 
TGTGTGATGAACTTCGACGGCGCCACCGGCTACCTGATCGGCGAGCCGAACAAGGGCCTGCACTGCATGTTC 
ACCATGATGAACCACGCCCGCCTGGGCACCGGCATGCAGGGCCTGTGCCTTGGCGAGACCAGTTACCAGGGC 
GCCGTGCGCTACGCCCGGGAGCGCTTGCAGATGCGCTCGCTGACCGGGCCGAAGGCGCCGGACAAGCCGGCC 
GACCCGATCATCGTGCACCCCGACGTGCGGCGCATGCTGCTGACCATGAAGGCGTTCAACGAGGGCAACCGC 
GCGCTGGCTTACTTCACCGCCCAGTTGCTCGACACCGAGCACCTGTCGCAGGACGCCGCCGAGCGCGAGCGG 
GCCGCCGACCTGCTGGCCTTCCTGACACCGATCTGCAAGGCCTTCATGACCGAGACCGGGCAGGAGGTGACC 
AACCTCGGCATGCAGGTCTACGGCGGCCACGGCTACATCCGCGAGTGGGGCATGGAGCAGTTGGTCCGCGAT 
TGTCGCATCGCACAGATCTACGAAGGCACCAACGGCATCCAGGCCCTCGACCTGCTCGGCCGCAAGGTATTG 
GGCAGCCAGGGCAAGCTGCTGCGCGGTTTCACCAAACTGGTCCACCAGTTGTGCCAGGCCCAGGCCGAGCAT 
CCGCAACTGAAGGGACAGGTCGCGCAACTGGCGGCGCTGAACGCGCAGTGGGGCGAACTGACCCAGCAGGTG 
GGCCTGGCGGCGATGAAGAATGCCGACGAAGTGGGCGCCGCCTCGGTGGACTACCTGATGTTCTCCGGCTAC 
GTGACCCTGGCCTATTTCTGGTTGCGCATCGCCCTGGTGGCGCGCGAGAAGCTGGATGCCGGCAGCGGCGAG 
GCCGCGTTCTACGAAGCCAAGCTGGCCACCGCCGACTTCTACTTCAGTCGCCTGCTGCCGCGCACCGCGGCG 
CACGCCGCGGCGATCCAGGCCGGCGCGGCGGGCCTGATGAGCCTGTCGGCGGAGCAGTTTTCGCTCTAG