ViewGene
Locus Name:
GeneID:
Location:

GeneID:47
TrivialName: PA14_08300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08300
PAO1 Ortholog Locus:PA0641
Sequence Length:3660
Protein Length:1219
Start: 707772
Stop: 711431
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04030.1|AE004499_9 (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
Identities = 1104/1221 (90%), Positives = 1133/1221 (92%), Gaps = 22/1221 (1%)
Sequence:
ATGAACAAGACCATCACGGGCCACAAGGGTGGCAGCAAGAAGCCGCGCCAGCCGGTGGAGATGCCGGACTCG
GTGCGCTCGATCGCGCGGGCGAAGATTCTCCTGGCACTGGGCGAAGGCGAGTTCGACGGTGGCGTCGACGGC
CGTTCGATCTACCTGGACGATACGCCGCTGCTGGCGGCGGACGGCTCGGTGAACTTCCCCGGAGTGACCTGG
GAGTTCCGTCCGGGCTCGGTGGACCAGGAACACATTGCCGGTGTGCCCGCCGTGGAAAACGAACTGGCGGTC
GGCGTCGAACTCAAGAGTGACGCGCCCTGGGTCCGCGCGGTGAACAACACCCAGCTCTCGGCGGTGCGCCTG
CGCCTGTCCTGGCCGGCCATCCAGCGCCAGCAGGAAAACGGTGACGTGGTCGGCTACCGCATCGACTACGCG
ATCGACATCGCCGTCGACGGCGGTGCCTGGCAGGAAGCGCTGAAGGCTTCGCTGGACGACAAGTCCACCAGC
CGCTACGAGCGCTCCCACCGTGTCGACCTGCCGGAGGCGCGGAGCGGCTGGCAGGTGCGCGTGCGCCGCCTG
ACGCCGAACCAGAACAACAACCGCGTCGCCGACACCATGCGGGTGGAGGCGATCACCGAGGTGATCGACGCC
AAGCTGCGCTACCCGAACACCGCGCTGCTGTTCGTCGAGTTCGATGCCAGCCAGTTCCAGAGCATTCCGCAG
ATATCGGTGGAAGCGCGCGGCCGGCGGGTGCGGGTGCCGAGCAACTACGATCCGCAGACCCGTAGCTACAGC
GGCACCTGGGACGGCTCGTTCAAGTCGGCCTGGACCAGCAACCCGGCCTGGCACTGGTACGACATCGTGTTG
CACAAGCGCTTCGGCCTCGGTCGGCGGATCGACGCGAGCATGGTCGACAAGTGGTCGCTGTACCGCATCGCC
CAGTACTGCGACCAGTCGGTGCCCGACGGCAAGGGCGGCCAGGAGCCGCGCTTCAGCTGCAACCTGTACCTG
CAGAGTCGCGCCGAAGCCTGGACCGTGCTGCGCGACCTGGCAGCGATCTTCCGCGGCATGTCCTACTGGTCC
GGCGCGGAAATGGTGGCGGTATCCGACATGCCGGAGGACGAGGCCTACACCTTCTCGCCGTCGAACACCGTG
CGTGGCGACGACGGCAGCCACTTCAACTACAGCAGCAGCCGCCAGCGCGATCGCCACACCCTGGCCCTGGTC
AACTACGACAATCCGGGCAACGGTTACCAGAGCCAACCGGTAGCGGTGAACAATGACCGCGCGCAGCGCCGC
TACGGCATCAGCCAGTTGGAGATCACCGCGATCGGTTGCACCTCCGAGGGCGAGGCGCAGCGGCGTGGCCAG
TGGGCGCTGCTGACCGAGGAGCTGGAGCAGGACGCGGTGACCTTCCGCACCGGCATGGATGGCCGTGGGCTG
GCGCCGGGGAAGATCATCGCCGTAGCCGACCCGGTCAAGTCCGGCAAGCAGATCGGCGGACGCCTGAGCGCG
GTGGATGGCCGCGCGCTGACCCTCGACCGCGACGTCGAGGCCCGACCCGGCGATCGCCTGCTGGTCAACCTG
CCGAACGGCAAGGCCGAGGCGCGCAGCGTCCAGTCGGTGGTAGGCCGCGTGCTGACCGTGACCGCCGCCTAT
TCGGAGACGCCTCGGCCCCAGGGGCAGTGGGCGCTGCAGAGCAACAGCCTGACCACCCAGCGCTTCCGCATC
ATGAGCATCACCCGGCCGGAGGACAATCTTTTCGAGATCACCGCGCTGCAACACAACGCGAGCAAGTTCGAC
GCCATCGACAACGGTGCGCGCATCGAGCTGCCGCCGGTCACCAGCATTCCGCCGGGCGTGCAGGCGCCGCCG
CAGAACGTGCGGATCAAGGCTTTCACCAAGGTCGACCAGGGGTTGGCGGTGACCAGCCTGTCGGCCTCCTGG
GATGCCGCGCCGAACGCGGTGGCCTACGAGGCCGAATGGCGCAAGGACTCGGGCAACTGGGTGCGGGTGCCG
CGAACCTCGGCGCTCGGTTTCGACGTGCCGGGCATCTATGCCGGTCGCTATCTGGTGCGGGTACGCGCCTTG
AACGTGATGGAGGTCGGCTCGGTCTACGCCAGCAGTGTGGAGACCGCTCTTGAGGGCAAGACCACGCCGCCG
CCGGCGCTGGCCTACCTGCGCTGCGTGGCCGGCCCCTGGCGCATCGGCCTGGAGTGGGGGTTCCCGGCCAGC
GGCGCAGCGGACACCGCCTACACCGAGATCCAGCAGTCCGCCACGCCCGGCGGCAGCGAGGAGACCGCACGG
GCGCTGGGCCTGTTCGCCTACCCAGGCAATACCCACCTGGTATCGCCGATACCGGCCGGCGAACGGCTGGCG
TTCCGCGGTCGCTTGATCGACCGTAGCGGCAACGTCGGCGCCTGGTCGAACTGGGTCACCGGCACCAGCTCC
AGCGACGCCAGCGAATACAACCAGTTGATCACCCAGGAGTACGTCGAGTCGGCGCTGGGCCAGCAATTCTTC
TCCGATATCGAGCGGATGCAGGTGGATATCGGGGGCTTGCAGAAGCAGGTCGGCGACCTCGCCGACGTTTTG
CTGTACGACCCGACCAAGGTCTACGCGAAGAACGAAATGGTGCGACAGGGGCAGCGGTTGTACCAGGCACTG
AAGGCTGTGCCGGCGAAGACGGCGCCGCCGAACGCGGCCTACTGGTCCGATATCGGCCAGTCGCTGGAAACT
GCCAACGGGCTGGCGCAGCAGGTGGCGAGCCATACCGCTGAAATCAGCGAACTCGACGGCAGGATCGAAGCA
GCGGCATCGAATCTGGATGTGCTGCAAGCTGCCGCCCGCGGGGAACCGGCGACCGGAGAGAAGGCGGATGCG
CTGAAGGGCTGGGACACCATTGCTCGAGCTGCCACCGAAGTCACCGTGCGGGCGAACGAGGACGAAGCGCAG
GCGAAGCGGACGAGCTTGCTTGAGGCGTGGACCGGGACGGCGGAGGGCAGGATCGCAACCGTCGAGTCGGTC
GTTGCGTCGAACAATGCTGTAACCGTCCAGCGGCTGGATCAGCTCACCGGCCAGGTTGCGAGCAACGCCTCG
GCGATCAGCACCGAACAGACCGTCCGTGCCAACGCGGACAGCGCCCTGGGGCAGCGGGTGGATACCGTCAGC
GCGCGCACCGATACCAACGAGGCGAACATCCAGACCACCTCTCAAGCGGTTACCTCGCTGGATGGCAACGTC
AAGGCGCTCTACAGCGTGAAGCTCCAGGCGCATGCCAACGGGCAGAAGTACGCCGCTGGCTGGCAACTGGGC
TTCGACAGCGGTACGAGCGTGACGACCATGGCGTTCCAGGCTGATCGGTTCCTCTGGTTCAACAGTTCCAGC
GGGCAGACAGTGGCGCCGGTTTCGATCGTTGGCGGCCAGATGTTTATCAACAACGCGATGATTCAGGAGGGC
ACCGTGTCGTTCCTGAAGATCGCCGATGACGTGCAGTCGACGAACTATATTTCCGGATCGTCTGGCTGGAAG
TTAGGCAAGAGTGGAAAATTCGAATTGAATGGTGCAGGGACTGGCTACTCCCTCAAACTCACTCCGACTGGC
ATGTACTTGACGGATACAACAACTGGGGTTGTTGTCGTCGAACTGGGATTGCTGTCGTGA
Translation:
MNKTITGHKGGSKKPRQPVEMPDSVRSIARAKILLALGEGEFDGGVDGRSIYLDDTPLLAADGSVNFPGVTW
EFRPGSVDQEHIAGVPAVENELAVGVELKSDAPWVRAVNNTQLSAVRLRLSWPAIQRQQENGDVVGYRIDYA
IDIAVDGGAWQEALKASLDDKSTSRYERSHRVDLPEARSGWQVRVRRLTPNQNNNRVADTMRVEAITEVIDA
KLRYPNTALLFVEFDASQFQSIPQISVEARGRRVRVPSNYDPQTRSYSGTWDGSFKSAWTSNPAWHWYDIVL
HKRFGLGRRIDASMVDKWSLYRIAQYCDQSVPDGKGGQEPRFSCNLYLQSRAEAWTVLRDLAAIFRGMSYWS
GAEMVAVSDMPEDEAYTFSPSNTVRGDDGSHFNYSSSRQRDRHTLALVNYDNPGNGYQSQPVAVNNDRAQRR
YGISQLEITAIGCTSEGEAQRRGQWALLTEELEQDAVTFRTGMDGRGLAPGKIIAVADPVKSGKQIGGRLSA
VDGRALTLDRDVEARPGDRLLVNLPNGKAEARSVQSVVGRVLTVTAAYSETPRPQGQWALQSNSLTTQRFRI
MSITRPEDNLFEITALQHNASKFDAIDNGARIELPPVTSIPPGVQAPPQNVRIKAFTKVDQGLAVTSLSASW
DAAPNAVAYEAEWRKDSGNWVRVPRTSALGFDVPGIYAGRYLVRVRALNVMEVGSVYASSVETALEGKTTPP
PALAYLRCVAGPWRIGLEWGFPASGAADTAYTEIQQSATPGGSEETARALGLFAYPGNTHLVSPIPAGERLA
FRGRLIDRSGNVGAWSNWVTGTSSSDASEYNQLITQEYVESALGQQFFSDIERMQVDIGGLQKQVGDLADVL
LYDPTKVYAKNEMVRQGQRLYQALKAVPAKTAPPNAAYWSDIGQSLETANGLAQQVASHTAEISELDGRIEA
AASNLDVLQAAARGEPATGEKADALKGWDTIARAATEVTVRANEDEAQAKRTSLLEAWTGTAEGRIATVESV
VASNNAVTVQRLDQLTGQVASNASAISTEQTVRANADSALGQRVDTVSARTDTNEANIQTTSQAVTSLDGNV
KALYSVKLQAHANGQKYAAGWQLGFDSGTSVTTMAFQADRFLWFNSSSGQTVAPVSIVGGQMFINNAMIQEG
TVSFLKIADDVQSTNYISGSSGWKLGKSGKFELNGAGTGYSLKLTPTGMYLTDTTTGVVVVELGLLS*
AnnotationID:57GeneID:47
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 14:02:01
Gene Name:
Confidence Code:3
GeneProduct:putative phage-related protein, tail component
Cell Localization:()
Synonyms:JF1
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(22) Related to phage, transposon, or plasmid
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4733
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAM85749.1|AE013822_8 (AE013822) putative phage tail protein [Yersinia pestis KIM]
          Length = 1067

 Score =  910 bits (2353), Expect = 0.0
 Identities = 443/843 (52%), Positives = 601/843 (71%), Gaps = 11/843 (1%)








 
Structural Features:
COG4733, Phage-related protein, tail component 
CD-Length = 952 residues,  93.4% aligned
Score = 1058 bits (2737), Expect = 0.0
Identities = 400/912 (43%), Positives = 523/912 (57%), Gaps = 23/912 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:97




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17239




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34604




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:47_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:47
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
89
                           PA0641_tr
                           translation of PA0641
                           1224
                           90.35
                           92.72
                           25
                           5656.0
     

     
     
11683
                           gb|AAG04030.1|AE004499_9
                           (AE004499) probable bacteriophage protein [Pseudomonas aeruginosa PAO1]
                           1224
                           90.35
                           92.72
                           25
                           5656.0
     

     
     
11684
                           dbj|BAB03218.1|
                           (AB046379) tail formation protein [Pseudomonas aeruginosa]
                           1220
                           49.01
                           50.08
                           593
                           3028.0
     

     
     
11685
                           gb|AAN55953.1|AE015733_5
                           (AE015733) prophage LambdaSo, host specificity protein J, putative [Shewanella oneidensis MR-1]
                           1358
                           44.03
                           61.70
                           156
                           2926.0
     

     
     
11686
                           gb|AAM85749.1|AE013822_8
                           (AE013822) putative phage tail protein [Yersinia pestis KIM]
                           1242
                           41.54
                           58.21
                           198
                           2497.0
     

     






      

          
GC ORFID: 43049How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0641Glimmer Score: 

          
Start: 6509115Stop: 6512774

          
Length: 3660


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0641 translation of PA0641Homolog Bit Score 2176.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7411 (ORF: BLASTX 1072.0), t_PA0641 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACAAGACCATCACGGGCCACAAGGGTGGCAGCAAGAAGCCGCGCCAGCCGGTGGAGATGCCGGACTCG 
GTGCGCTCGATCGCGCGGGCGAAGATTCTCCTGGCACTGGGCGAAGGCGAGTTCGACGGTGGCGTCGACGGC 
CGTTCGATCTACCTGGACGATACGCCGCTGCTGGCGGCGGACGGCTCGGTGAACTTCCCCGGAGTGACCTGG 
GAGTTCCGTCCGGGCTCGGTGGACCAGGAACACATTGCCGGTGTGCCCGCCGTGGAAAACGAACTGGCGGTC 
GGCGTCGAACTCAAGAGTGACGCGCCCTGGGTCCGCGCGGTGAACAACACCCAGCTCTCGGCGGTGCGCCTG 
CGCCTGTCCTGGCCGGCCATCCAGCGCCAGCAGGAAAACGGTGACGTGGTCGGCTACCGCATCGACTACGCG 
ATCGACATCGCCGTCGACGGCGGTGCCTGGCAGGAAGCGCTGAAGGCTTCGCTGGACGACAAGTCCACCAGC 
CGCTACGAGCGCTCCCACCGTGTCGACCTGCCGGAGGCGCGGAGCGGCTGGCAGGTGCGCGTGCGCCGCCTG 
ACGCCGAACCAGAACAACAACCGCGTCGCCGACACCATGCGGGTGGAGGCGATCACCGAGGTGATCGACGCC 
AAGCTGCGCTACCCGAACACCGCGCTGCTGTTCGTCGAGTTCGATGCCAGCCAGTTCCAGAGCATTCCGCAG 
ATATCGGTGGAAGCGCGCGGCCGGCGGGTGCGGGTGCCGAGCAACTACGATCCGCAGACCCGTAGCTACAGC 
GGCACCTGGGACGGCTCGTTCAAGTCGGCCTGGACCAGCAACCCGGCCTGGCACTGGTACGACATCGTGTTG 
CACAAGCGCTTCGGCCTCGGTCGGCGGATCGACGCGAGCATGGTCGACAAGTGGTCGCTGTACCGCATCGCC 
CAGTACTGCGACCAGTCGGTGCCCGACGGCAAGGGCGGCCAGGAGCCGCGCTTCAGCTGCAACCTGTACCTG 
CAGAGTCGCGCCGAAGCCTGGACCGTGCTGCGCGACCTGGCAGCGATCTTCCGCGGCATGTCCTACTGGTCC 
GGCGCGGAAATGGTGGCGGTATCCGACATGCCGGAGGACGAGGCCTACACCTTCTCGCCGTCGAACACCGTG 
CGTGGCGACGACGGCAGCCACTTCAACTACAGCAGCAGCCGCCAGCGCGATCGCCACACCCTGGCCCTGGTC 
AACTACGACAATCCGGGCAACGGTTACCAGAGCCAACCGGTAGCGGTGAACAATGACCGCGCGCAGCGCCGC 
TACGGCATCAGCCAGTTGGAGATCACCGCGATCGGTTGCACCTCCGAGGGCGAGGCGCAGCGGCGTGGCCAG 
TGGGCGCTGCTGACCGAGGAGCTGGAGCAGGACGCGGTGACCTTCCGCACCGGCATGGATGGCCGTGGGCTG 
GCGCCGGGGAAGATCATCGCCGTAGCCGACCCGGTCAAGTCCGGCAAGCAGATCGGCGGACGCCTGAGCGCG 
GTGGATGGCCGCGCGCTGACCCTCGACCGCGACGTCGAGGCCCGACCCGGCGATCGCCTGCTGGTCAACCTG 
CCGAACGGCAAGGCCGAGGCGCGCAGCGTCCAGTCGGTGGTAGGCCGCGTGCTGACCGTGACCGCCGCCTAT 
TCGGAGACGCCTCGGCCCCAGGGGCAGTGGGCGCTGCAGAGCAACAGCCTGACCACCCAGCGCTTCCGCATC 
ATGAGCATCACCCGGCCGGAGGACAATCTTTTCGAGATCACCGCGCTGCAACACAACGCGAGCAAGTTCGAC 
GCCATCGACAACGGTGCGCGCATCGAGCTGCCGCCGGTCACCAGCATTCCGCCGGGCGTGCAGGCGCCGCCG 
CAGAACGTGCGGATCAAGGCTTTCACCAAGGTCGACCAGGGGTTGGCGGTGACCAGCCTGTCGGCCTCCTGG 
GATGCCGCGCCGAACGCGGTGGCCTACGAGGCCGAATGGCGCAAGGACTCGGGCAACTGGGTGCGGGTGCCG 
CGAACCTCGGCGCTCGGTTTCGACGTGCCGGGCATCTATGCCGGTCGCTATCTGGTGCGGGTACGCGCCTTG 
AACGTGATGGAGGTCGGCTCGGTCTACGCCAGCAGTGTGGAGACCGCTCTTGAGGGCAAGACCACGCCGCCG 
CCGGCGCTGGCCTACCTGCGCTGCGTGGCCGGCCCCTGGCGCATCGGCCTGGAGTGGGGGTTCCCGGCCAGC 
GGCGCAGCGGACACCGCCTACACCGAGATCCAGCAGTCCGCCACGCCCGGCGGCAGCGAGGAGACCGCACGG 
GCGCTGGGCCTGTTCGCCTACCCAGGCAATACCCACCTGGTATCGCCGATACCGGCCGGCGAACGGCTGGCG 
TTCCGCGGTCGCTTGATCGACCGTAGCGGCAACGTCGGCGCCTGGTCGAACTGGGTCACCGGCACCAGCTCC 
AGCGACGCCAGCGAATACAACCAGTTGATCACCCAGGAGTACGTCGAGTCGGCGCTGGGCCAGCAATTCTTC 
TCCGATATCGAGCGGATGCAGGTGGATATCGGGGGCTTGCAGAAGCAGGTCGGCGACCTCGCCGACGTTTTG 
CTGTACGACCCGACCAAGGTCTACGCGAAGAACGAAATGGTGCGACAGGGGCAGCGGTTGTACCAGGCACTG 
AAGGCTGTGCCGGCGAAGACGGCGCCGCCGAACGCGGCCTACTGGTCCGATATCGGCCAGTCGCTGGAAACT 
GCCAACGGGCTGGCGCAGCAGGTGGCGAGCCATACCGCTGAAATCAGCGAACTCGACGGCAGGATCGAAGCA 
GCGGCATCGAATCTGGATGTGCTGCAAGCTGCCGCCCGCGGGGAACCGGCGACCGGAGAGAAGGCGGATGCG 
CTGAAGGGCTGGGACACCATTGCTCGAGCTGCCACCGAAGTCACCGTGCGGGCGAACGAGGACGAAGCGCAG 
GCGAAGCGGACGAGCTTGCTTGAGGCGTGGACCGGGACGGCGGAGGGCAGGATCGCAACCGTCGAGTCGGTC 
GTTGCGTCGAACAATGCTGTAACCGTCCAGCGGCTGGATCAGCTCACCGGCCAGGTTGCGAGCAACGCCTCG 
GCGATCAGCACCGAACAGACCGTCCGTGCCAACGCGGACAGCGCCCTGGGGCAGCGGGTGGATACCGTCAGC 
GCGCGCACCGATACCAACGAGGCGAACATCCAGACCACCTCTCAAGCGGTTACCTCGCTGGATGGCAACGTC 
AAGGCGCTCTACAGCGTGAAGCTCCAGGCGCATGCCAACGGGCAGAAGTACGCCGCTGGCTGGCAACTGGGC 
TTCGACAGCGGTACGAGCGTGACGACCATGGCGTTCCAGGCTGATCGGTTCCTCTGGTTCAACAGTTCCAGC 
GGGCAGACAGTGGCGCCGGTTTCGATCGTTGGCGGCCAGATGTTTATCAACAACGCGATGATTCAGGAGGGC 
ACCGTGTCGTTCCTGAAGATCGCCGATGACGTGCAGTCGACGAACTATATTTCCGGATCGTCTGGCTGGAAG 
TTAGGCAAGAGTGGAAAATTCGAATTGAATGGTGCAGGGACTGGCTACTCCCTCAAACTCACTCCGACTGGC 
ATGTACTTGACGGATACAACAACTGGGGTTGTTGTCGTCGAACTGGGATTGCTGTCGTGA