ViewGene
Locus Name:
GeneID:
Location:

GeneID:4699
TrivialName: PA14_27910
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27910
PAO1 Ortholog Locus:PA2801
Sequence Length:405
Protein Length:134
Start: 2416591
Stop: 2416187
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06189.1|AE004707_8 (AE004707) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 131/134 (97%), Positives = 133/134 (99%)
Sequence:
ATGGCTGACAGACAATTGCTACACACGGCCCATATCCCGGTGCGCTGGGGCGACATGGACAGCTACGGGCAC
GTCAACAACACCCTTTATTTCCAGTACCTGGAAGAGGCCCGGGTGGCCTGGTTCGAAACCCTCGGCGTCGAC
CTGGAAGGCGCTGCCGAGGGGCCGGTGGTGCTGCAAAGCCTGCACACCTACCTGAAGCCGGTGGTGCATCCG
GCCACCGTGGTGGTGGAACTGTACGCCGGCAAGCTGGGCACCAGCAGCCTGGTACTGGAACATCGCCTGAGC
ACCCTGGAAGATCCGCAAGGCACCTATGGCGAAGGCCACTGCAAGCTGGTCTGGGTGCGCCACGCGGAAAAC
CGTTCGACGCCCGTGCCGGACAGCATACGCGCCGCGATCGCCTGA
Translation:
MADRQLLHTAHIPVRWGDMDSYGHVNNTLYFQYLEEARVAWFETLGVDLEGAAEGPVVLQSLHTYLKPVVHP
ATVVVELYAGKLGTSSLVLEHRLSTLEDPQGTYGEGHCKLVWVRHAENRSTPVPDSIRAAIA*
AnnotationID:4705GeneID:4699
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 08:08:10
Gene Name:
Confidence Code:3
GeneProduct:putative thioesterase
Cell Localization:()
Synonyms:PA2801
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0824
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG0824, FcbC, Predicted thioesterase
CD-Length = 137 residues,  96.4% aligned
Score =  104 bits (261), Expect = 4e-24
Identities = 39/135 (28%), Positives = 57/135 (42%), Gaps = 6/135 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9399




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26539




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36230




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4699_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4699
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7068
                           PA2801_tr
                           translation of PA2801
                           134
                           97.76
                           99.25
                           0
                           701.0
     

     
     
186554
                           gb|AAG06189.1|AE004707_8
                           (AE004707) hypothetical protein PA2801 [Pseudomonas aeruginosa PAO1]
                           134
                           97.76
                           99.25
                           0
                           701.0
     

     
     
186556
                           gb|AAM40446.1|
                           (AE012213) conserved hypothetical protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           138
                           41.30
                           59.42
                           8
                           264.0
     

     
     
186557
                           gb|AAM36118.1|
                           (AE011754) conserved hypothetical protein [Xanthomonas axonopodis pv. citri str. 306]
                           138
                           40.57
                           58.69
                           8
                           263.0
     

     
     
186555
                           gb|AAQ59615.1|
                           (AE016916) conserved hypothetical protein [Chromobacterium violaceum ATCC 12472]
                           141
                           39.71
                           55.31
                           7
                           291.0
     

     






      

          
GC ORFID: 47701How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2801Glimmer Score: 

          
Start: 2537335Stop: 2537739

          
Length: 405


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2801 translation of PA2801Homolog Bit Score 274.0

          
Other Homologs:  t_PA2801 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTGACAGACAATTGCTACACACGGCCCATATCCCGGTGCGCTGGGGCGACATGGACAGCTACGGGCAC 
GTCAACAACACCCTTTATTTCCAGTACCTGGAAGAGGCCCGGGTGGCCTGGTTCGAAACCCTCGGCGTCGAC 
CTGGAAGGCGCTGCCGAGGGGCCGGTGGTGCTGCAAAGCCTGCACACCTACCTGAAGCCGGTGGTGCATCCG 
GCCACCGTGGTGGTGGAACTGTACGCCGGCAAGCTGGGCACCAGCAGCCTGGTACTGGAACATCGCCTGAGC 
ACCCTGGAAGATCCGCAAGGCACCTATGGCGAAGGCCACTGCAAGCTGGTCTGGGTGCGCCACGCGGAAAAC 
CGTTCGACGCCCGTGCCGGACAGCATACGCGCCGCGATCGCCTGA