ViewGene
Locus Name:
GeneID:
Location:

GeneID:4698
TrivialName: PA14_44990
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_44990
PAO1 Ortholog Locus:PA1503
Sequence Length:432
Protein Length:143
Start: 4011809
Stop: 4011378
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04892.1|AE004579_4 (AE004579) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 143/143 (100%), Positives = 143/143 (100%)
Sequence:
ATGACCACCATCAGTCTGGAAACCGCGCTGGGCATTACCCGCCAGGCGCTGGCGGTGGGGCGCGAGCTGTCC
ACCGCGCCCCTGACCATCGCGGTGCTCGATGCTGGCGGCCACCTGGTGGCGCTGCAGCGCGAGGACGGCGCC
AGCATGCTGCGACCGCAGATCGCCATCGGCAAGGCCTGGGGCGCCGTGGCCCTGGGCAAGTCGTCGCGGCTG
CTGGCGGCGGATGCACAGCAGCGGCCTTCGTTCATTTCCGCGGTGAACACCCTGGCCCATGGCAATCTGGTT
CCGGCGCCGGGCGGGGTGTTGATTCGCAACGACAAGGCAGAGGTGGTCGGCGCGGTCGGTATCAGCGGCGAT
ACCTCGGATATCGACGAGCAATGCGCGATCCAGGGCGTGTTGGCGGTCGGGCTGGTGCCCGACGCCGGTTGA
Translation:
MTTISLETALGITRQALAVGRELSTAPLTIAVLDAGGHLVALQREDGASMLRPQIAIGKAWGAVALGKSSRL
LAADAQQRPSFISAVNTLAHGNLVPAPGGVLIRNDKAEVVGAVGISGDTSDIDEQCAIQGVLAVGLVPDAG*
AnnotationID:4704GeneID:4698
AnnotatorUID: diggins
Modification Date/Time: 2005-02-25 07:07:21
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1503
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAL51455.1| (AE009470) GLCG PROTEIN [Brucella melitensis 16M]
          Length = 143

 Score =  141 bits (356), Expect = 9e-34
 Identities = 74/143 (51%), Positives = 97/143 (67%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9397




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26537




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37303




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4698_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4698
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7067
                           PA1503_tr
                           translation of PA1503
                           143
                           99.99
                           99.99
                           0
                           700.0
     

     
     
186546
                           gb|AAG04892.1|AE004579_4
                           (AE004579) hypothetical protein PA1503 [Pseudomonas aeruginosa PAO1]
                           143
                           99.99
                           99.99
                           0
                           700.0
     

     
     
186547
                           gb|AAN69876.1|AE016626_11
                           (AE016790) conserved hypothetical protein [Pseudomonas putida KT2440]
                           146
                           62.32
                           78.76
                           3
                           479.0
     

     
     
186549
                           gb|AAL51455.1|
                           (AE009470) GLCG PROTEIN [Brucella melitensis 16M]
                           143
                           51.74
                           67.83
                           0
                           356.0
     

     
     
186550
                           gb|AAN30672.1|AE014468_4
                           (AE014468) conserved hypothetical protein [Brucella suis 1330]
                           143
                           51.74
                           67.83
                           0
                           356.0
     

     






      

          
GC ORFID: 47700How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1503Glimmer Score: 

          
Start: 942100Stop: 942531

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1503 translation of PA1503Homolog Bit Score 274.0

          
Other Homologs:  t_PA1503 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCACCATCAGTCTGGAAACCGCGCTGGGCATTACCCGCCAGGCGCTGGCGGTGGGGCGCGAGCTGTCC 
ACCGCGCCCCTGACCATCGCGGTGCTCGATGCTGGCGGCCACCTGGTGGCGCTGCAGCGCGAGGACGGCGCC 
AGCATGCTGCGACCGCAGATCGCCATCGGCAAGGCCTGGGGCGCCGTGGCCCTGGGCAAGTCGTCGCGGCTG 
CTGGCGGCGGATGCACAGCAGCGGCCTTCGTTCATTTCCGCGGTGAACACCCTGGCCCATGGCAATCTGGTT 
CCGGCGCCGGGCGGGGTGTTGATTCGCAACGACAAGGCAGAGGTGGTCGGCGCGGTCGGTATCAGCGGCGAT 
ACCTCGGATATCGACGAGCAATGCGCGATCCAGGGCGTGTTGGCGGTCGGGCTGGTGCCCGACGCCGGTTGA