ViewGene
Locus Name:
GeneID:
Location:

GeneID:4697
TrivialName: PA14_53740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_53740
PAO1 Ortholog Locus:PA0814
Sequence Length:435
Protein Length:144
Start: 4764566
Stop: 4765000
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04203.1|AE004516_8 (AE004516) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/144 (98%), Positives = 142/144 (98%)
Sequence:
ATGCAGACATCCCCCGCTCCGGCCATCGTCGCCGGCGGCGCCTACCAGCCGGTGGTGCTCCACGCCGGCATC
GCCTACGTCAGCGGCCAGTTGCCGTGCCAGCACGGCGAGCTGCGCTGGACCGGCAAGGTCGGCAGCGAACTC
GACCTGGAACAGGCCCGCCAGGCCGCCCGGCTCTGCGCGGCGCGCTGCCTGCTGGCGCTGGAGGAGGCGCTG
GGCGGCCTGCAACGGGTCGAGCGGCTGCTCAAGGTGACCGGCTACGTCGCCAGCGCGGCGGGTTTCGTCCAG
CAGCCGGCGGTGATCGATGCCGCCAGCGAGTATTTCGACGAGGTGCTCGGCGCGCGCGGCGGCCACGCCCGC
GCCGCCGTCGGCGTGGCCGAGCTGCCGCGCGGCGCCGCGGTGGAGGTGGAACTGATCGCGGCGGTGCGGCCA
TGA
Translation:
MQTSPAPAIVAGGAYQPVVLHAGIAYVSGQLPCQHGELRWTGKVGSELDLEQARQAARLCAARCLLALEEAL
GGLQRVERLLKVTGYVASAAGFVQQPAVIDAASEYFDEVLGARGGHARAAVGVAELPRGAAVEVELIAAVRP
*
AnnotationID:4703GeneID:4697
AnnotatorUID: danlee
Modification Date/Time: 2004-04-20 17:05:54
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA0814
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9395




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26535




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4697
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7066
                           PA0814_tr
                           translation of PA0814
                           144
                           98.61
                           98.61
                           0
                           701.0
     

     
     
186529
                           gb|AAG04203.1|AE004516_8
                           (AE004516) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           144
                           98.61
                           98.61
                           0
                           701.0
     

     
     
186532
                           dbj|BAC17095.1|
                           (AP005214) conserved hypothetical protein [Corynebacterium efficiens YS-314]
                           154
                           46.75
                           56.49
                           11
                           294.0
     

     
     
186530
                           emb|CAB45555.1|
                           (AL939117) conserved hypothetical protein [Streptomyces coelicolor A3(2)]
                           160
                           44.37
                           56.25
                           21
                           307.0
     

     
     
186531
                           dbj|BAC72300.1|
                           (AP005039) hypothetical protein [Streptomyces avermitilis MA-4680]
                           156
                           42.94
                           57.05
                           12
                           289.0
     

     






      

          
GC ORFID: 47699How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0814Glimmer Score: 

          
Start: 189341Stop: 188907

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0814 translation of PA0814Homolog Bit Score 274.0

          
Other Homologs:  t_PA0814 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAGACATCCCCCGCTCCGGCCATCGTCGCCGGCGGCGCCTACCAGCCGGTGGTGCTCCACGCCGGCATC 
GCCTACGTCAGCGGCCAGTTGCCGTGCCAGCACGGCGAGCTGCGCTGGACCGGCAAGGTCGGCAGCGAACTC 
GACCTGGAACAGGCCCGCCAGGCCGCCCGGCTCTGCGCGGCGCGCTGCCTGCTGGCGCTGGAGGAGGCGCTG 
GGCGGCCTGCAACGGGTCGAGCGGCTGCTCAAGGTGACCGGCTACGTCGCCAGCGCGGCGGGTTTCGTCCAG 
CAGCCGGCGGTGATCGATGCCGCCAGCGAGTATTTCGACGAGGTGCTCGGCGCGCGCGGCGGCCACGCCCGC 
GCCGCCGTCGGCGTGGCCGAGCTGCCGCGCGGCGCCGCGGTGGAGGTGGAACTGATCGCGGCGGTGCGGCCA 
TGA