ViewGene
Locus Name:
GeneID:
Location:

GeneID:4696
TrivialName: PA14_33460
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33460
PAO1 Ortholog Locus:PA2415
Sequence Length:426
Protein Length:141
Start: 2945626
Stop: 2946051
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05803.1|AE004668_13 (AE004668) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/141 (99%), Positives = 141/141 (100%)
Sequence:
ATGGCCACCGCACTACGCTTCAGACCCCTGGACGCCTTCTACAACGTCCTCAACCCGGTTCCCTTCGGTTTC
TTCGTCGCCGCCCTGGTCTTCGACGCCACCTATTTCGCCACGGCGGAGGTGATGTGGGGCAAGAGCGCGGCC
TGGCTGATCAGTCTCGGCCTGCTGTTCGCCATCCTGCCCTGCGTCGTCGACCTGTGCCGCGTATGGCTGCTG
CGGCGCGCGGCGGTCGTCGCGGCGGCCAGGGTTTCCTCCTTGCTGAAGTTCGCCGGCATCGTCCTGGCCATC
TTCAATGCCTTCGTGCACAGCCGCGACGCCTATGCGGTGATGCCGGCCGGGCTATGGCTGTCGATCGCGACG
GTGCTGCTGCTGGCGCTGGGAGAGGCGCTCCTGGCGGTATCCGCGGAGGAGGTGGCGCATGGCTAG
Translation:
MATALRFRPLDAFYNVLNPVPFGFFVAALVFDATYFATAEVMWGKSAAWLISLGLLFAILPCVVDLCRVWLL
RRAAVVAAARVSSLLKFAGIVLAIFNAFVHSRDAYAVMPAGLWLSIATVLLLALGEALLAVSAEEVAHG*
AnnotationID:4702GeneID:4696
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 11:11:38
Gene Name:
Confidence Code:3
GeneProduct:putative membrane protein
Cell Localization:()
Synonyms:PA2415
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4244
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4244, COG4244, Predicted membrane protein
CD-Length = 160 residues,  91.2% aligned
Score = 88.8 bits (220), Expect = 2e-19
Identities = 53/146 (36%), Positives = 65/146 (44%), Gaps = 5/146 (3%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9393




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26533




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32950




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4696_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4696
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7065
                           PA2415_tr
                           translation of PA2415
                           141
                           99.29
                           99.99
                           0
                           703.0
     

     
     
186527
                           gb|AAG05803.1|AE004668_13
                           (AE004668) hypothetical protein PA2415 [Pseudomonas aeruginosa PAO1]
                           141
                           99.29
                           99.99
                           0
                           703.0
     

     
     
186528
                           emb|CAD86412.1|
                           (BX321864) conserved hypothetical protein [Nitrosomonas europaea ATCC 19718]
                           153
                           47.71
                           60.13
                           19
                           324.0
     

     






      

          
GC ORFID: 47698How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2415Glimmer Score: 

          
Start: 2008290Stop: 2007865

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA2415 translation of PA2415Homolog Bit Score 275.0

          
Other Homologs:  t_PA2415 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCACCGCACTACGCTTCAGACCCCTGGACGCCTTCTACAACGTCCTCAACCCGGTTCCCTTCGGTTTC 
TTCGTCGCCGCCCTGGTCTTCGACGCCACCTATTTCGCCACGGCGGAGGTGATGTGGGGCAAGAGCGCGGCC 
TGGCTGATCAGTCTCGGCCTGCTGTTCGCCATCCTGCCCTGCGTCGTCGACCTGTGCCGCGTATGGCTGCTG 
CGGCGCGCGGCGGTCGTCGCGGCGGCCAGGGTTTCCTCCTTGCTGAAGTTCGCCGGCATCGTCCTGGCCATC 
TTCAATGCCTTCGTGCACAGCCGCGACGCCTATGCGGTGATGCCGGCCGGGCTATGGCTGTCGATCGCGACG 
GTGCTGCTGCTGGCGCTGGGAGAGGCGCTCCTGGCGGTATCCGCGGAGGAGGTGGCGCATGGCTAG