ViewGene
Locus Name:
GeneID:
Location:

GeneID:4695
TrivialName: PA14_36830
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_36830
PAO1 Ortholog Locus:PA2145
Sequence Length:399
Protein Length:132
Start: 3282187
Stop: 3282585
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05533.1|AE004641_12 (AE004641) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 132/132 (100%), Positives = 132/132 (100%)
Sequence:
ATGGAAAACAGTGACGAAGTGCGATTCCAGCACTATTTCATTTCTCTCGTCGAACAGGTGGCGAAACCGCTT
TTCGTCGACTCCTGCGAAGAGGCGCGCAGCTACGGCCTGGACTGCAACGTGGACCTCGACCTCGACGAGGAC
GGCCATCCTCGCCTGCGCCTGGAAGTCGGCGAGCCGGGAGGCGAGAAAAGCCACTACAGCCTGCTGGCGATT
CCCGGCGAGCGGGTCATCCATCGCCAGTACCTGGCCGGGGCCCAGGAATGGCACAGCCTGCCGGCCGAGCTG
GCGTCGATCAACCCGATGGTGCTGGACAGCGAGCTGGCGGTATTCTTCCGCCGCGCCTTCGACCTTCGCCTG
GAGGGCCCCGAACGCCGTCACCCGGCCGGCTTCTGGTAA
Translation:
MENSDEVRFQHYFISLVEQVAKPLFVDSCEEARSYGLDCNVDLDLDEDGHPRLRLEVGEPGGEKSHYSLLAI
PGERVIHRQYLAGAQEWHSLPAELASINPMVLDSELAVFFRRAFDLRLEGPERRHPAGFW*
AnnotationID:4701GeneID:4695
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 11:11:06
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA2145
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9391




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26531




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4695
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7064
                           PA2145_tr
                           translation of PA2145
                           132
                           99.99
                           99.99
                           0
                           702.0
     

     
     
186526
                           gb|AAG05533.1|AE004641_12
                           (AE004641) hypothetical protein PA2145 [Pseudomonas aeruginosa PAO1]
                           132
                           99.99
                           99.99
                           0
                           702.0
     

     






      

          
GC ORFID: 47697How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2145Glimmer Score: 

          
Start: 1671727Stop: 1671329

          
Length: 399


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA2145 translation of PA2145Homolog Bit Score 275.0

          
Other Homologs:  t_PA2145 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGAAAACAGTGACGAAGTGCGATTCCAGCACTATTTCATTTCTCTCGTCGAACAGGTGGCGAAACCGCTT 
TTCGTCGACTCCTGCGAAGAGGCGCGCAGCTACGGCCTGGACTGCAACGTGGACCTCGACCTCGACGAGGAC 
GGCCATCCTCGCCTGCGCCTGGAAGTCGGCGAGCCGGGAGGCGAGAAAAGCCACTACAGCCTGCTGGCGATT 
CCCGGCGAGCGGGTCATCCATCGCCAGTACCTGGCCGGGGCCCAGGAATGGCACAGCCTGCCGGCCGAGCTG 
GCGTCGATCAACCCGATGGTGCTGGACAGCGAGCTGGCGGTATTCTTCCGCCGCGCCTTCGACCTTCGCCTG 
GAGGGCCCCGAACGCCGTCACCCGGCCGGCTTCTGGTAA