ViewGene
Locus Name:
GeneID:
Location:

GeneID:4694
TrivialName: PA14_37150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_37150
PAO1 Ortholog Locus:PA2120
Sequence Length:429
Protein Length:142
Start: 3310576
Stop: 3311004
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05508.1|AE004639_6 (AE004639) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/142 (98%), Positives = 140/142 (98%)
Sequence:
ATGACCAGCCTGCCGCTCGAAGCCAACGCCGCCGCCACCCTCGCCGAATGGCACGGGCTGATCGCCCGCCGC
GACCTCTCCGGGTTGCCGCGCCTGCTGCACCCCGACGCCGTGTTCCGCTCGCCGATGGCGCACAAGCCGTAT
ACCGGCGCACCGGTGGTCTCGATGATCCTGAATACCGTGCTCACGGTCTTCGAGGATTTCGCCTATCACCGC
CAGTTGGCCAGCGCCGACGGCCGCAGCGTGGTGCTGGAGTTCAGCGCGCGGGTCGGCGAACGCGAACTGAAA
GGCATCGACATGATCCGCTTCGACGACGACGGCCGGATCGTCGACTTCGAAGTGATGGTCCGCCCCATGAGC
GGCCTCCAGGCCCTCGGCGAGGAAATGGGCCGGCGCCTGGCGCCCTATCTGGCCGCGAGCAAGGCCTGA
Translation:
MTSLPLEANAAATLAEWHGLIARRDLSGLPRLLHPDAVFRSPMAHKPYTGAPVVSMILNTVLTVFEDFAYHR
QLASADGRSVVLEFSARVGERELKGIDMIRFDDDGRIVDFEVMVRPMSGLQALGEEMGRRLAPYLAASKA*
AnnotationID:4700GeneID:4694
AnnotatorUID: diggins
Modification Date/Time: 2005-03-03 09:09:19
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2120
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9389




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26529




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4694
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7063
                           PA2120_tr
                           translation of PA2120
                           142
                           98.59
                           98.59
                           0
                           704.0
     

     
     
186522
                           gb|AAG05508.1|AE004639_6
                           (AE004639) hypothetical protein PA2120 [Pseudomonas aeruginosa PAO1]
                           142
                           98.59
                           98.59
                           0
                           704.0
     

     
     
186523
                           emb|CAD17468.1|
                           (AL646078) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           147
                           54.42
                           64.62
                           5
                           378.0
     

     
     
186524
                           emb|CAE29977.1|
                           (BX572607) conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
                           152
                           38.81
                           55.26
                           14
                           285.0
     

     
     
186525
                           dbj|BAC68979.1|
                           (AP005026) hypothetical protein [Streptomyces avermitilis MA-4680]
                           146
                           36.30
                           50.68
                           17
                           244.0
     

     






      

          
GC ORFID: 47696How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2120Glimmer Score: 

          
Start: 1643338Stop: 1642910

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2120 translation of PA2120Homolog Bit Score 275.0

          
Other Homologs:  t_PA2120 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCCTGCCGCTCGAAGCCAACGCCGCCGCCACCCTCGCCGAATGGCACGGGCTGATCGCCCGCCGC 
GACCTCTCCGGGTTGCCGCGCCTGCTGCACCCCGACGCCGTGTTCCGCTCGCCGATGGCGCACAAGCCGTAT 
ACCGGCGCACCGGTGGTCTCGATGATCCTGAATACCGTGCTCACGGTCTTCGAGGATTTCGCCTATCACCGC 
CAGTTGGCCAGCGCCGACGGCCGCAGCGTGGTGCTGGAGTTCAGCGCGCGGGTCGGCGAACGCGAACTGAAA 
GGCATCGACATGATCCGCTTCGACGACGACGGCCGGATCGTCGACTTCGAAGTGATGGTCCGCCCCATGAGC 
GGCCTCCAGGCCCTCGGCGAGGAAATGGGCCGGCGCCTGGCGCCCTATCTGGCCGCGAGCAAGGCCTGA