ViewGene
Locus Name:
GeneID:
Location:

GeneID:4693
TrivialName: PA14_46310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_46310
PAO1 Ortholog Locus:PA1401
Sequence Length:408
Protein Length:135
Start: 4119387
Stop: 4119794
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04790.1|AE004569_8 (AE004569) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/135 (98%), Positives = 133/135 (98%)
Sequence:
ATGACCCGTGACCGACTCGCCGAGCGCTACCGCGCCTACATCGACTGCCTGAACCGCCAGGACTGGGCGCGC
CTGGGCGACTTCGTCCATGACCGGGTGCGCTACAACGACGTGCAGATCGGACTCGACGGCTACCTGCGGATG
CTCGAAGGCGACTTCCTGGCAATCCCCGACCTGCGCTTCGAGATCGAACGCCTGCTCGTCGATCCGCCGGGC
GTCGCCTGCCGCCTGCACTTCGACTGCACACCCGGCGGCCGGCTGTTCGGCATCCCGGTCAACGGCCAGCGG
GTACGCTTCGCCGAGAACGTCTTCTACGAATTCGAAGACGAGCGCATCGCCGGCGTCTGGTCGGTGATCGAC
AAGGCGGCGGTCGCCGCGCAGGTACAGGTGGCGTCGCCGTCGTCCTGA
Translation:
MTRDRLAERYRAYIDCLNRQDWARLGDFVHDRVRYNDVQIGLDGYLRMLEGDFLAIPDLRFEIERLLVDPPG
VACRLHFDCTPGGRLFGIPVNGQRVRFAENVFYEFEDERIAGVWSVIDKAAVAAQVQVASPSS*
AnnotationID:4699GeneID:4693
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 21:09:29
Gene Name:
Confidence Code:3
GeneProduct:putative ester cyclase
Cell Localization:()
Synonyms:PA1401
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5485
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG5485, COG5485, Predicted ester cyclase 
CD-Length = 131 residues,  99.2% aligned
Score =  191 bits (486), Expect = 3e-50
Identities = 78/130 (60%), Positives = 91/130 (70%), Gaps = 1/130 (0%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9387




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26527




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37395




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4693_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4693
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7062
                           PA1401_tr
                           translation of PA1401
                           135
                           98.51
                           98.51
                           0
                           703.0
     

     
     
186515
                           gb|AAG04790.1|AE004569_8
                           (AE004569) hypothetical protein PA1401 [Pseudomonas aeruginosa PAO1]
                           135
                           98.51
                           98.51
                           0
                           703.0
     

     
     
186516
                           dbj|BAB49405.1|
                           (AP002999) hypothetical protein [Mesorhizobium loti]
                           135
                           55.55
                           68.88
                           10
                           404.0
     

     
     
186517
                           gb|AAO54886.1|
                           (AE016860) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           141
                           49.64
                           61.70
                           9
                           351.0
     

     
     
186518
                           gb|AAF71511.1|AF232006_14
                           (AF232004) unknown [Pseudomonas syringae pv. tomato]
                           141
                           49.64
                           61.70
                           9
                           351.0
     

     






      

          
GC ORFID: 47695How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1401Glimmer Score: 

          
Start: 834522Stop: 834115

          
Length: 408


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1401 translation of PA1401Homolog Bit Score 275.0

          
Other Homologs:  t_PA1401 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCCGTGACCGACTCGCCGAGCGCTACCGCGCCTACATCGACTGCCTGAACCGCCAGGACTGGGCGCGC 
CTGGGCGACTTCGTCCATGACCGGGTGCGCTACAACGACGTGCAGATCGGACTCGACGGCTACCTGCGGATG 
CTCGAAGGCGACTTCCTGGCAATCCCCGACCTGCGCTTCGAGATCGAACGCCTGCTCGTCGATCCGCCGGGC 
GTCGCCTGCCGCCTGCACTTCGACTGCACACCCGGCGGCCGGCTGTTCGGCATCCCGGTCAACGGCCAGCGG 
GTACGCTTCGCCGAGAACGTCTTCTACGAATTCGAAGACGAGCGCATCGCCGGCGTCTGGTCGGTGATCGAC 
AAGGCGGCGGTCGCCGCGCAGGTACAGGTGGCGTCGCCGTCGTCCTGA