ViewGene

Locus Name:
GeneID:
Location:

GeneID:4692
TrivialName: PA14_08500
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08500
PAO1 Ortholog Locus:PA0664
Sequence Length:423
Protein Length:140
Start: 727721
Stop: 728143
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04053.1|AE004501_5 (AE004501) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 140/140 (100%), Positives = 140/140 (100%)
Sequence:
GTGAGCATTATGTGGAGCAAGAACAAAGGCCGGGCCGACGTCCAGCGTTTCACCGGGCAGACCAGCCTGATC
GCCAGCGGCGCCGAACTGGTCGGTGACATGAACCTCAAGGGCGCGGTGCAGATCGACGGCACCGTCCGCGGA
GCGTTGCAGGCGCACGAAGGGCTGGTGCGGGTCAGCGCCGGCGGTCGAGTCGATGGCGAAATCCGGGCCCCC
CATGTGATCATCGACGGTCAGGTGGATGGCGACATCCATGCCATCGAACGCCTGGAGCTGGGGGCCCAGGCC
CGGGTGAAGGGCAATCTTCACTATGGGCTGATCGAAACCGCCATGGGGGCCCAGATCGAGGGCCGCCTGTGC
CCGATGACCGAGGCCAGTCCGCGCCCGCTGGAACTGCCTGCCAGCGTGGAAACTGTGGATTAG
Translation:
MSIMWSKNKGRADVQRFTGQTSLIASGAELVGDMNLKGAVQIDGTVRGALQAHEGLVRVSAGGRVDGEIRAP
HVIIDGQVDGDIHAIERLELGAQARVKGNLHYGLIETAMGAQIEGRLCPMTEASPRPLELPASVETVD*
AnnotationID:4698GeneID:4692
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 18:06:14
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:PA0664
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1664
Secondary Functional Category(ies):cell envelope biogenesis, outer membrane
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC93561.1| (AJ414160) putative membrane protein [Yersinia pestis CO92]
          Length = 223

 Score = 65.1 bits (157), Expect = 6e-11
 Identities = 30/79 (37%), Positives = 53/79 (67%), Gaps = 1/79 (1%)
Structural Features:
COG1664, CcmA, Integral membrane protein CcmA involved in cell shape determination 
[Cell envelope biogenesis, outer membrane]
CD-Length = 146 residues,  95.2% aligned
Score =  120 bits (301), Expect = 7e-29
Identities = 43/140 (30%), Positives = 71/140 (50%), Gaps = 1/140 (0%)

Genomic Context:
Comment:
ReferenceID:15158
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26525
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33903
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4692_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4692

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7061 PA0664_tr translation of PA0664 140 99.99 99.99 0 707.0
186514 gb|AAG04053.1|AE004501_5 (AE004501) hypothetical protein PA0664 [Pseudomonas aeruginosa PAO1] 140 99.28 99.99 0 704.0
GC ORFID: 47694How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0664Glimmer Score:
Start: 6529064Stop: 6529486
Length: 423
Start Codon: GTGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA0664 translation of PA0664Homolog Bit Score 276.0
Other Homologs: t_PA0664 (ORF: GLIMMER)
GC ORF Sequence
GTGAGCATTATGTGGAGCAAGAACAAAGGCCGGGCCGACGTCCAGCGTTTCACCGGGCAGACCAGCCTGATC
GCCAGCGGCGCCGAACTGGTCGGTGACATGAACCTCAAGGGCGCGGTGCAGATCGACGGCACCGTCCGCGGA
GCGTTGCAGGCGCACGAAGGGCTGGTGCGGGTCAGCGCCGGCGGTCGAGTCGATGGCGAAATCCGGGCCCCC
CATGTGATCATCGACGGTCAGGTGGATGGCGACATCCATGCCATCGAACGCCTGGAGCTGGGGGCCCAGGCC
CGGGTGAAGGGCAATCTTCACTATGGGCTGATCGAAACCGCCATGGGGGCCCAGATCGAGGGCCGCCTGTGC
CCGATGACCGAGGCCAGTCCGCGCCCGCTGGAACTGCCTGCCAGCGTGGAAACTGTGGATTAG