ViewGene
Locus Name:
GeneID:
Location:

GeneID:4690
TrivialName: PA14_14820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_14820
PAO1 Ortholog Locus:PA3807
Sequence Length:432
Protein Length:143
Start: 1259590
Stop: 1260021
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07194.1|AE004798_17 (AE004798) nucleoside diphosphate kinase [Pseudomonas aeruginosa PAO1]
Identities = 143/143 (100%), Positives = 143/143 (100%)
Sequence:
ATGGCACTGCAACGCACCCTGTCCATCATCAAGCCGGACGCCGTTTCCAAGAACGTGATCGGCGAAATCCTG
ACCCGCTTCGAGAAAGCCGGCCTGCGCGTCGTCGCCGCTAAAATGGTTCAGCTGTCCGAGCGTGAAGCCGGC
GGCTTCTATGCCGAGCACAAAGAGCGTCCGTTCTTCAAGGACCTGGTTTCCTTCATGACTTCCGGTCCGGTT
GTAGTCCAGGTTCTGGAAGGCGAGGACGCCATCGCCAAGAACCGCGAGCTGATGGGCGCCACCGATCCGAAG
AAAGCCGACGCCGGTACCATCCGCGCCGACTTCGCCGTCTCCATCGACGAGAACGCCGTCCACGGTTCCGAT
TCCGAAGCTTCCGCCGCTCGCGAGATCGCCTATTTCTTCGCGGCTACCGAAGTCTGCGAGCGCATTCGCTGA
Translation:
MALQRTLSIIKPDAVSKNVIGEILTRFEKAGLRVVAAKMVQLSEREAGGFYAEHKERPFFKDLVSFMTSGPV
VVQVLEGEDAIAKNRELMGATDPKKADAGTIRADFAVSIDENAVHGSDSEASAAREIAYFFAATEVCERIR*
AnnotationID:4696GeneID:4690
AnnotatorUID: diggins
Modification Date/Time: 2005-04-24 11:11:27
Gene Name:ndk
Confidence Code:1
GeneProduct:nucleoside diphosphate kinase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00562,COG0105,pfam00334,KOG0888
Secondary Functional Category(ies):
EC Number:2.7.4.6
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66474.1|AE016276_9 (AE016777) nucleoside diphosphate kinase [Pseudomonas putida
           KT2440]
          Length = 141

 Score =  222 bits (565), Expect = 5e-58
 Identities = 115/141 (81%), Positives = 128/141 (90%)

>emb|CAD84055.1| (BX321856) Nucleoside diphosphate kinase [Nitrosomonas europaea
           ATCC 19718]
          Length = 141

 Score =  196 bits (499), Expect = 2e-50
 Identities = 100/141 (70%), Positives = 117/141 (82%)






 
Structural Features:
smart00562, NDK
CD-Length = 138 residues, 100.0% aligned
Score =  212 bits (541), Expect = 3e-56
Identities = 87/138 (63%), Positives = 106/138 (76%)

COG0105, Ndk, Nucleoside diphosphate kinase 
[Nucleotide transport and metabolism] 
CD-Length = 135 residues, 100.0% aligned
Score =  211 bits (540), Expect = 3e-56
Identities = 87/135 (64%), Positives = 106/135 (78%)

pfam00334, NDK, Nucleoside diphosphate kinase.
CD-Length = 138 residues, 100.0% aligned
Score =  188 bits (480), Expect = 3e-49
Identities = 71/138 (51%), Positives = 95/138 (68%)

KOG0888, Nucleoside diphosphate kinase 
[Nucleotide transport and metabolism]
CD-Length = 156 residues,  91.0% aligned
Score =  155 bits (392), Expect = 5e-39
Identities = 66/142 (46%), Positives = 90/142 (63%), Gaps = 3/142 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9381




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26521




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31749




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4690_cdd.html


    		




 
URL:

















    ReferenceID:34282




  
Author/Investigator(s):
        Sundin GW, Shankar S, Chugani SA, Chopade BA, Kavanaugh-Black A, Chakrabarty AM.





  
Title:
        Nucleoside diphosphate kinase from Pseudomonas aeruginosa: characterization of the gene and its role in cellular growth and exopolysaccharide alginate synthesis.




  
PubMed:
        8809750


MedLine:
        




    
Source:
Mol Microbiol. 1996 Jun;20(5):965-79.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8809750









           
Homologs By Global Alignment 

           

       



     
Gene ID:4690
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7059
                           PA3807_tr
                           translation of PA3807
                           143
                           99.99
                           99.99
                           0
                           705.0
     

     
     
186351
                           gb|AAG07194.1|AE004798_17
                           (AE004798) nucleoside diphosphate kinase [Pseudomonas aeruginosa PAO1]
                           143
                           99.99
                           99.99
                           0
                           705.0
     

     
     
186352
                           gb|AAC44154.1|
                           (U41267) Ndk [Pseudomonas aeruginosa]
                           143
                           97.90
                           97.90
                           0
                           689.0
     

     
     
186353
                           gb|AAC79499.2|
                           (AF096864) nucleoside diphosphate kinase [Pseudomonas aeruginosa]
                           150
                           88.66
                           92.66
                           7
                           667.0
     

     
     
186355
                           dbj|BAD01055.1|
                           (AB109467) nucleotide diphosphate kinase [Pseudomonas putida]
                           143
                           80.41
                           89.51
                           2
                           565.0
     

     






      

          
GC ORFID: 47692How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3807Glimmer Score: 

          
Start: 3694348Stop: 3693917

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3807 translation of PA3807Homolog Bit Score 276.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4524 (ORF: BLASTX 216.0), t_PA3807 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCACTGCAACGCACCCTGTCCATCATCAAGCCGGACGCCGTTTCCAAGAACGTGATCGGCGAAATCCTG 
ACCCGCTTCGAGAAAGCCGGCCTGCGCGTCGTCGCCGCTAAAATGGTTCAGCTGTCCGAGCGTGAAGCCGGC 
GGCTTCTATGCCGAGCACAAAGAGCGTCCGTTCTTCAAGGACCTGGTTTCCTTCATGACTTCCGGTCCGGTT 
GTAGTCCAGGTTCTGGAAGGCGAGGACGCCATCGCCAAGAACCGCGAGCTGATGGGCGCCACCGATCCGAAG 
AAAGCCGACGCCGGTACCATCCGCGCCGACTTCGCCGTCTCCATCGACGAGAACGCCGTCCACGGTTCCGAT 
TCCGAAGCTTCCGCCGCTCGCGAGATCGCCTATTTCTTCGCGGCTACCGAAGTCTGCGAGCGCATTCGCTGA