ViewGene
Locus Name:
GeneID:
Location:

GeneID:469
TrivialName: PA14_66350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_66350
PAO1 Ortholog Locus:PA5020
Sequence Length:1803
Protein Length:600
Start: 5916990
Stop: 5918792
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08405.1|AE004914_6 (AE004914) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
Identities = 598/600 (99%), Positives = 599/600 (99%)
Sequence:
ATGTCCGAAACCCTGCTCAGTTCCCGCAACCTGGCGTTCGAGCTGTACGAAGTCCTCGATGCCGAAGCCCTG
ACCCAGCGCCCGCGCTTCGCCGAACATAGCCGCGAAACCTTCGATGCCGCCCTCGGCACCGCGCGGAGCCTG
GCGGAAAAGCTGTTCGCCCCGCACAACCGCAAGGGCGACGAACACGAGCCGCTCTATGAGAATGGCTCAGCC
ACGCTGATTCCGGAAGTGAAGCCGGCAGTGGATGCCTTCCTCGACGCCGGCTTCCTCAACGCCACCCGCAGC
TTCGAGCAAGGCGGCATGCAGTTGCCGACCCTGCTGTCGCAGGCCTGCTTCGCCCACTTCCAGGCAGCCAAC
GTCGGTAGCTCGGCCTATCCGTTCCTGACCATGGGCGCCGCCAACCTGATCGAGAGCTTCGGCAGCGAGGAG
CAGAAGCAGCGCTTCCTGCAACCGATGATCGAGGGCCGCTTCTTCGGCACCATGGCCCTCACCGAACCGCAC
GCCGGCTCCTCCCTCTCCGACATCCGCACCCGCGCCGAACCGGCTGCCGACGGCAGCTATCGGATCAAGGGC
AACAAGATCTTCATCTCCGGCGGCGACCACCCGCTCTCCGAGAACATCGTGCATATGGTCCTGGCCAAGCTG
CCGGATGCACCGCCGGGGGTGAAAGGCATCTCGCTGTTCATCGTGCCGAAGTTCCTGGTCAACGCCGACGGC
AGCCTAGGGCCGCGCAACGACGTGATCCTCGCCGGCCTGTTCCACAAGATGGGTTATCGCGGCACCACCTCC
ACCGCGCTGAACTTCGGCGACAACGGCGCCTGCGTCGGCTACCTGGTGGGCAAGCCGCACCACGGCCTGGCC
TACATGTTCCAGATGATGAACGAGGCGCGCATCGGCGTCGGCATGGGCGCGGTGATGCTTGGCTATGCCGGT
TACCTCTATTCGCTGGAGTACGCCCGCGAACGCCCGCAGGGCCGCCTGCCGGACGGCAAGGACCCGAGCGCG
CCACAGGTGGCAATCATCCGCCACGCCGACGTGCGGCGCATGCTGCTGACCCAGAAGGCCTATGTCGAAGGC
GCCTTCGACCTGGGCCTGTACGCCGCGCGCCTGTTCGACGACAGCCAGACCCTGGAGGACGACGAACAGCGC
CGCCAGGCCCACGAACTGCTCGACCTGCTGACCCCGATCGTCAAGTCCTGGCCCTCGGAGTTCTGCCTGAAG
GCCAACGAGCTGGCGATCCAGATCCTCGGCGGCCACGGCTACACCCGCGAATACCCGGTGGAACAGTACTAC
CGCGACAATCGCCTGAACCCGATCCACGAAGGCACCCACGGCATCCAGTCCCTCGACCTGCTGGGACGCAAG
GTCGGGCAGAACAACGGCGCCGGCCTGCGCCAGCTGACCCGCCTGATCCAGGACGCCTGCCGGCGCGCCGAA
GCCCATCCATCCCTGGCCGCCCTGCGCCAGCCGCTGGAACGGCTGGTGGCGCGGCTGTCCGAAGTGACCCTG
GCACTGCTCGGCGACCTGATGCAGGGCCAGGTCAACCAGGGCCTGGCCAACTCGGCGCTGTACCTGAAGGTG
TTCGGCCATGCGGTGATCGGCTGGCGCTGGCTGGAGCAGGCGATCCGCGCCGAGGAAGGGCTGGCTCGCGGC
GACTGCGCCGACGCCGACTTCTATCGCGGCAAGTTGCAGGCCGCTCGCTACTTCCTGACCTGGGAAGTGCCT
GGCTGCCACCACGAACTGGCGCTGCTGGAGGCCCGCGACGACGTGTGTTCGAGCATGCAGGAAGAATGGTTC
TGA
Translation:
MSETLLSSRNLAFELYEVLDAEALTQRPRFAEHSRETFDAALGTARSLAEKLFAPHNRKGDEHEPLYENGSA
TLIPEVKPAVDAFLDAGFLNATRSFEQGGMQLPTLLSQACFAHFQAANVGSSAYPFLTMGAANLIESFGSEE
QKQRFLQPMIEGRFFGTMALTEPHAGSSLSDIRTRAEPAADGSYRIKGNKIFISGGDHPLSENIVHMVLAKL
PDAPPGVKGISLFIVPKFLVNADGSLGPRNDVILAGLFHKMGYRGTTSTALNFGDNGACVGYLVGKPHHGLA
YMFQMMNEARIGVGMGAVMLGYAGYLYSLEYARERPQGRLPDGKDPSAPQVAIIRHADVRRMLLTQKAYVEG
AFDLGLYAARLFDDSQTLEDDEQRRQAHELLDLLTPIVKSWPSEFCLKANELAIQILGGHGYTREYPVEQYY
RDNRLNPIHEGTHGIQSLDLLGRKVGQNNGAGLRQLTRLIQDACRRAEAHPSLAALRQPLERLVARLSEVTL
ALLGDLMQGQVNQGLANSALYLKVFGHAVIGWRWLEQAIRAEEGLARGDCADADFYRGKLQAARYFLTWEVP
GCHHELALLEARDDVCSSMQEEWF*
AnnotationID:478GeneID:469
AnnotatorUID: diggins
Modification Date/Time: 2005-03-14 12:12:59
Gene Name:
Confidence Code:3
GeneProduct:putative acyl-CoA dehydrogenase
Cell Localization:()
Synonyms:PA5020
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:cd01153,cd00567,cd01158
Secondary Functional Category(ies):central intermediary metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58448.1| (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 600

 Score = 1014 bits (2623), Expect = 0.0
 Identities = 494/600 (82%), Positives = 543/600 (90%)

>gb|AAN70515.1|AE016693_4 (AE016792) acyl-CoA dehydrogenase family protein [Pseudomonas
           putida KT2440]
          Length = 600

 Score =  993 bits (2568), Expect = 0.0
 Identities = 490/600 (81%), Positives = 528/600 (88%)

>emb|CAD15464.1| (AL646066) PROBABLE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN
           [Ralstonia solanacearum]
          Length = 625

 Score =  672 bits (1733), Expect = 0.0
 Identities = 360/628 (57%), Positives = 436/628 (69%), Gaps = 31/628 (4%)








 
Structural Features:
cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenase (ACAD).
CD-Length = 407 residues, 100.0% aligned
Score =  463 bits (1192), Expect = 3e-131

cd00567, ACAD, Acyl-CoA dehydrogenase (ACAD). 
CD-Length = 369 residues,  97.6% aligned
Score =  188 bits (480), Expect = 1e-48

cd01158, SCAD/SBCAD, Short chain acyl-CoA dehydrogenase (SCAD).
CD-Length = 373 residues,  97.9% aligned
Score =  178 bits (454), Expect = 1e-45







   
Genomic Context:






   
Comment:


















    ReferenceID:941




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18083




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35081




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:469_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:469
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
806
                           PA5020_tr
                           translation of PA5020
                           600
                           99.66
                           99.83
                           0
                           3113.0
     

     
     
34271
                           gb|AAG08405.1|AE004914_6
                           (AE004914) probable acyl-CoA dehydrogenase [Pseudomonas aeruginosa PAO1]
                           600
                           99.66
                           99.83
                           0
                           3113.0
     

     
     
34272
                           gb|AAO58448.1|
                           (AE016874) acyl-CoA dehydrogenase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           600
                           82.33
                           90.50
                           0
                           2623.0
     

     
     
34273
                           gb|AAN70515.1|AE016693_4
                           (AE016792) acyl-CoA dehydrogenase family protein [Pseudomonas putida KT2440]
                           600
                           81.66
                           88.00
                           0
                           2568.0
     

     
     
34274
                           emb|CAD15464.1|
                           (AL646066) PROBABLE ACYL-COA DEHYDROGENASE OXIDOREDUCTASE PROTEIN [Ralstonia solanacearum]
                           630
                           57.61
                           69.84
                           35
                           1763.0
     

     






      

          
GC ORFID: 43471How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5020Glimmer Score: 

          
Start: 5180673Stop: 5182475

          
Length: 1803


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5020 translation of PA5020Homolog Bit Score 1203.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3697 (ORF: BLASTX 1024.0), t_PA0507 (ORF: BLASTX 397.0), t_PA4199 (ORF: BLASTX 389.0), t_PA0508 (ORF: BLASTX 387.0), psyr_15may02_Scaffold6_revised_gene6639 (ORF: BLASTX 382.0), t_PA5020 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGAAACCCTGCTCAGTTCCCGCAACCTGGCGTTCGAGCTGTACGAAGTCCTCGATGCCGAAGCCCTG 
ACCCAGCGCCCGCGCTTCGCCGAACATAGCCGCGAAACCTTCGATGCCGCCCTCGGCACCGCGCGGAGCCTG 
GCGGAAAAGCTGTTCGCCCCGCACAACCGCAAGGGCGACGAACACGAGCCGCTCTATGAGAATGGCTCAGCC 
ACGCTGATTCCGGAAGTGAAGCCGGCAGTGGATGCCTTCCTCGACGCCGGCTTCCTCAACGCCACCCGCAGC 
TTCGAGCAAGGCGGCATGCAGTTGCCGACCCTGCTGTCGCAGGCCTGCTTCGCCCACTTCCAGGCAGCCAAC 
GTCGGTAGCTCGGCCTATCCGTTCCTGACCATGGGCGCCGCCAACCTGATCGAGAGCTTCGGCAGCGAGGAG 
CAGAAGCAGCGCTTCCTGCAACCGATGATCGAGGGCCGCTTCTTCGGCACCATGGCCCTCACCGAACCGCAC 
GCCGGCTCCTCCCTCTCCGACATCCGCACCCGCGCCGAACCGGCTGCCGACGGCAGCTATCGGATCAAGGGC 
AACAAGATCTTCATCTCCGGCGGCGACCACCCGCTCTCCGAGAACATCGTGCATATGGTCCTGGCCAAGCTG 
CCGGATGCACCGCCGGGGGTGAAAGGCATCTCGCTGTTCATCGTGCCGAAGTTCCTGGTCAACGCCGACGGC 
AGCCTAGGGCCGCGCAACGACGTGATCCTCGCCGGCCTGTTCCACAAGATGGGTTATCGCGGCACCACCTCC 
ACCGCGCTGAACTTCGGCGACAACGGCGCCTGCGTCGGCTACCTGGTGGGCAAGCCGCACCACGGCCTGGCC 
TACATGTTCCAGATGATGAACGAGGCGCGCATCGGCGTCGGCATGGGCGCGGTGATGCTTGGCTATGCCGGT 
TACCTCTATTCGCTGGAGTACGCCCGCGAACGCCCGCAGGGCCGCCTGCCGGACGGCAAGGACCCGAGCGCG 
CCACAGGTGGCAATCATCCGCCACGCCGACGTGCGGCGCATGCTGCTGACCCAGAAGGCCTATGTCGAAGGC 
GCCTTCGACCTGGGCCTGTACGCCGCGCGCCTGTTCGACGACAGCCAGACCCTGGAGGACGACGAACAGCGC 
CGCCAGGCCCACGAACTGCTCGACCTGCTGACCCCGATCGTCAAGTCCTGGCCCTCGGAGTTCTGCCTGAAG 
GCCAACGAGCTGGCGATCCAGATCCTCGGCGGCCACGGCTACACCCGCGAATACCCGGTGGAACAGTACTAC 
CGCGACAATCGCCTGAACCCGATCCACGAAGGCACCCACGGCATCCAGTCCCTCGACCTGCTGGGACGCAAG 
GTCGGGCAGAACAACGGCGCCGGCCTGCGCCAGCTGACCCGCCTGATCCAGGACGCCTGCCGGCGCGCCGAA 
GCCCATCCATCCCTGGCCGCCCTGCGCCAGCCGCTGGAACGGCTGGTGGCGCGGCTGTCCGAAGTGACCCTG 
GCACTGCTCGGCGACCTGATGCAGGGCCAGGTCAACCAGGGCCTGGCCAACTCGGCGCTGTACCTGAAGGTG 
TTCGGCCATGCGGTGATCGGCTGGCGCTGGCTGGAGCAGGCGATCCGCGCCGAGGAAGGGCTGGCTCGCGGC 
GACTGCGCCGACGCCGACTTCTATCGCGGCAAGTTGCAGGCCGCTCGCTACTTCCTGACCTGGGAAGTGCCT 
GGCTGCCACCACGAACTGGCGCTGCTGGAGGCCCGCGACGACGTGTGTTCGAGCATGCAGGAAGAATGGTTC 
TGA