ViewGene
Locus Name:
GeneID:
Location:

GeneID:4689
TrivialName: PA14_20850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20850
PAO1 Ortholog Locus:PA3341
Sequence Length:435
Protein Length:144
Start: 1794757
Stop: 1795191
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06729.1|AE004756_7 (AE004756) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 143/144 (99%), Positives = 143/144 (99%)
Sequence:
ATGGCTCAGACAGACAAGCACTATTTCGGCACCTTGCTAGCCCAGACTTCCCGTGCTTGGCGCGCTGAACTC
GACCGCCGCCTCAGTCACCTCGGCCTGTCCCAGGCGCGCTGGTTGGTGTTGTTGCATCTGGCGCGCCATCGC
GATTCGCCCACCCAGCGCGAGTTGGCCCAATCGGTGGGGGTCGAAGGCCCGACCCTGGCGCGACTGCTCGAC
GGCCTCGAGTCCCAGGGCCTGGTACGGCGCCTGGCGGTGGCGGAGGACCGGCGGGCCAAGCACATCGTGCTG
ACTCCCAAGGCCGATGTGCTGATCGCCGATATCGAGGCCATCGCCGCCAGCGTTCGCAACGACGTACTGACC
GGCATCGACGAGTCCGAGCAGGCGCTGTGCCAGCAGGTGCTCTTGCGAATCCTGGCGAACCTGGAAAAGCGC
TGA
Translation:
MAQTDKHYFGTLLAQTSRAWRAELDRRLSHLGLSQARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLD
GLESQGLVRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLLRILANLEKR
*
AnnotationID:4695GeneID:4689
AnnotatorUID: diggins
Modification Date/Time: 2005-04-15 10:10:03
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, MarR family
Cell Localization:()
Synonyms:slyA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:MarR family transcriptional regulator for hemolysin
Functional Category Confidence Code:5
COGs:smart00347,pfam01047,COG1846
Secondary Functional Category(ies):antibiotic resistance and susceptibility
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN70089.1|AE016648_7 (AE016790) transcriptional regulator, MarR family [Pseudomonas
           putida KT2440]
          Length = 145

 Score =  181 bits (458), Expect = 1e-45
 Identities = 95/139 (68%), Positives = 110/139 (79%)

>gb|AAL20366.1| (AE008762) MarR family transcriptional regulator for hemolysin
           [Salmonella typhimurium LT2]
          Length = 146

 Score =  102 bits (255), Expect = 5e-22
 Identities = 55/133 (41%), Positives = 83/133 (62%), Gaps = 4/133 (3%)

>gb|AAN80494.1|AE016761_69 (AE016761) Transcriptional regulator slyA [Escherichia coli CFT073]
          Length = 146

 Score = 98.6 bits (244), Expect = 9e-21
 Identities = 54/133 (40%), Positives = 83/133 (62%), Gaps = 4/133 (3%)






 
Structural Features:
smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein
CD-Length = 101 residues, 100.0% aligned
Score = 65.6 bits (160), Expect = 2e-12
Identities = 36/102 (35%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

pfam01047, MarR, MarR family. 
CD-Length = 104 residues,  97.1% aligned
Score = 56.0 bits (135), Expect = 2e-09
Identities = 33/102 (32%), Positives = 52/102 (50%), Gaps = 1/102 (0%)

COG1846, MarR, Transcriptional regulators [Transcription]
CD-Length = 126 residues,  96.8% aligned
Score = 56.9 bits (136), Expect = 1e-09
Identities = 41/123 (33%), Positives = 60/123 (48%), Gaps = 1/123 (0%)







   
Genomic Context:






   
Comment:


















    ReferenceID:9379




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26519




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32224




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4689_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4689
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7058
                           PA3341_tr
                           translation of PA3341
                           144
                           99.30
                           99.30
                           0
                           706.0
     

     
     
186341
                           gb|AAG06729.1|AE004756_7
                           (AE004756) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           144
                           99.30
                           99.30
                           0
                           706.0
     

     
     
186342
                           gb|AAN70089.1|AE016648_7
                           (AE016790) transcriptional regulator, MarR family [Pseudomonas putida KT2440]
                           145
                           66.89
                           76.55
                           1
                           454.0
     

     
     
186343
                           gb|AAO55165.1|
                           (AE016861) transcriptional regulator, MarR family [Pseudomonas syringae pv. tomato str. DC3000]
                           144
                           63.19
                           74.30
                           0
                           424.0
     

     
     
186344
                           gb|AAL20366.1|
                           (AE008762) MarR family transcriptional regulator for hemolysin [Salmonella typhimurium LT2]
                           152
                           36.18
                           55.26
                           14
                           249.0
     

     






      

          
GC ORFID: 47691How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3341Glimmer Score: 

          
Start: 3159175Stop: 3158741

          
Length: 435


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3341 translation of PA3341Homolog Bit Score 276.0

          
Other Homologs:  psyr_15may02_Scaffold5_revised_gene6403 (ORF: BLASTX 164.0), t_PA3341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTCAGACAGACAAGCACTATTTCGGCACCTTGCTAGCCCAGACTTCCCGTGCTTGGCGCGCTGAACTC 
GACCGCCGCCTCAGTCACCTCGGCCTGTCCCAGGCGCGCTGGTTGGTGTTGTTGCATCTGGCGCGCCATCGC 
GATTCGCCCACCCAGCGCGAGTTGGCCCAATCGGTGGGGGTCGAAGGCCCGACCCTGGCGCGACTGCTCGAC 
GGCCTCGAGTCCCAGGGCCTGGTACGGCGCCTGGCGGTGGCGGAGGACCGGCGGGCCAAGCACATCGTGCTG 
ACTCCCAAGGCCGATGTGCTGATCGCCGATATCGAGGCCATCGCCGCCAGCGTTCGCAACGACGTACTGACC 
GGCATCGACGAGTCCGAGCAGGCGCTGTGCCAGCAGGTGCTCTTGCGAATCCTGGCGAACCTGGAAAAGCGC 
TGA