ViewGene
Locus Name:
GeneID:
Location:

GeneID:4688
TrivialName: PA14_27220
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27220
PAO1 Ortholog Locus:PA2850
Sequence Length:429
Protein Length:142
Start: 2365385
Stop: 2364957
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06238.1|AE004711_10 (AE004711) organic hydroperoxide resistance protein [Pseudomonas aeruginosa PAO1]
Identities = 140/142 (98%), Positives = 142/142 (100%)
Sequence:
ATGCAAACCATCAAGGCTCTCTACACCGCAAGCGCAACCGCCACCGGAGGCCGTGACGGCCGTGCGGTATCC
TCGGACGGCGTGCTCGACGTGAAACTCAGCACTCCGCGCGAACTGGGCGGCCAGGGCGGCGCGGCCACCAAC
CCGGAACAACTGTTCGCCGCCGGCTACTCGGCCTGCTTCATCGGGGCCCTGAAGTTCGTTGCCGGCCAGCGC
AAGCAGACCCTTCCCGCCGACGCCTCGATAACCGGCAAGGTCGGCATCGGCCAGATCCCCGGCGGCTTCGGC
CTGGAGGTCGAACTGCACATCAGCCTGCCGGGCCTGGAGCGCGAAGCCGCCGAAGCGCTGGTAGCCGCCGCC
CACCAGGTCTGCCCCTACTCCAACGCTACCCGCGGCAATATCGACGTACGCCTGAACGTGTCGGTCTGA
Translation:
MQTIKALYTASATATGGRDGRAVSSDGVLDVKLSTPRELGGQGGAATNPEQLFAAGYSACFIGALKFVAGQR
KQTLPADASITGKVGIGQIPGGFGLEVELHISLPGLEREAAEALVAAAHQVCPYSNATRGNIDVRLNVSV*
AnnotationID:4694GeneID:4688
AnnotatorUID: diggins
Modification Date/Time: 2005-04-06 19:07:03
Gene Name:ohr
Confidence Code:1
GeneProduct:organic hydroperoxide resistance protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(1) Adaptation, protection
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1764
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67478.1|AE016374_10 (AE016780) organic hydroperoxide resistance protein [Pseudomonas
           putida KT2440]
          Length = 142

 Score =  219 bits (559), Expect = 3e-57
 Identities = 106/142 (74%), Positives = 122/142 (85%)

>gb|AAM39583.1| (AE012122) organic hydroperoxide resistance protein [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 142

 Score =  201 bits (511), Expect = 9e-52
 Identities = 101/137 (73%), Positives = 111/137 (81%)

>gb|AAM35174.1| (AE011653) organic hydroperoxide resistance protein [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 142

 Score =  194 bits (494), Expect = 9e-50
 Identities = 96/137 (70%), Positives = 109/137 (79%)








 
Structural Features:
COG1764, OsmC, Predicted redox protein, regulator of disulfide bond formation 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 143 residues, 100.0% aligned
Score =  164 bits (417), Expect = 3e-42
Identities = 78/143 (54%), Positives = 100/143 (69%), Gaps = 2/143 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9377




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26517




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36207




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4688_cdd.html


    		




 
URL:

















    ReferenceID:36402




  
Author/Investigator(s):
        Ochsner UA, Hassett DJ, Vasil ML.





  
Title:
        Genetic and physiological characterization of ohr, encoding a protein involved in organic hydroperoxide resistance in Pseudomonas aeruginosa.




  
PubMed:
        11133975


MedLine:
        




    
Source:
J Bacteriol. 2001 Jan;183(2):773-8.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=11133975









           
Homologs By Global Alignment 

           

       



     
Gene ID:4688
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7057
                           PA2850_tr
                           translation of PA2850
                           142
                           98.59
                           99.99
                           0
                           707.0
     

     
     
186286
                           gb|AAG06238.1|AE004711_10
                           (AE004711) organic hydroperoxide resistance protein [Pseudomonas aeruginosa PAO1]
                           142
                           98.59
                           99.99
                           0
                           707.0
     

     
     
186287
                           gb|AAO55287.1|
                           (AE016862) organic hydroperoxide resistance protein [Pseudomonas syringae pv. tomato str. DC3000]
                           142
                           77.46
                           88.73
                           3
                           576.0
     

     
     
186288
                           gb|AAN67478.1|AE016374_10
                           (AE016780) organic hydroperoxide resistance protein [Pseudomonas putida KT2440]
                           142
                           74.64
                           85.91
                           0
                           559.0
     

     
     
186289
                           gb|AAM39583.1|
                           (AE012122) organic hydroperoxide resistance protein [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           143
                           70.62
                           77.62
                           2
                           506.0
     

     






      

          
GC ORFID: 47690How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2850Glimmer Score: 

          
Start: 2588542Stop: 2588970

          
Length: 429


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2850 translation of PA2850Homolog Bit Score 276.0

          
Other Homologs:  psyr_15may02_Scaffold8_revised_gene7674 (ORF: BLASTX 223.0), t_PA2850 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAACCATCAAGGCTCTCTACACCGCAAGCGCAACCGCCACCGGAGGCCGTGACGGCCGTGCGGTATCC 
TCGGACGGCGTGCTCGACGTGAAACTCAGCACTCCGCGCGAACTGGGCGGCCAGGGCGGCGCGGCCACCAAC 
CCGGAACAACTGTTCGCCGCCGGCTACTCGGCCTGCTTCATCGGGGCCCTGAAGTTCGTTGCCGGCCAGCGC 
AAGCAGACCCTTCCCGCCGACGCCTCGATAACCGGCAAGGTCGGCATCGGCCAGATCCCCGGCGGCTTCGGC 
CTGGAGGTCGAACTGCACATCAGCCTGCCGGGCCTGGAGCGCGAAGCCGCCGAAGCGCTGGTAGCCGCCGCC 
CACCAGGTCTGCCCCTACTCCAACGCTACCCGCGGCAATATCGACGTACGCCTGAACGTGTCGGTCTGA