ViewGene
Locus Name:
GeneID:
Location:

GeneID:4687
TrivialName: PA14_28950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_28950
PAO1 Ortholog Locus:PA2722
Sequence Length:393
Protein Length:130
Start: 2504167
Stop: 2503775
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06110.1|AE004700_6 (AE004700) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/130 (97%), Positives = 130/130 (100%)
Sequence:
ATGGATCGATTCACCGGCGGCTGCCTCTGCGGCAAGGTCCGCCTGGTGGCGAGCGGCCAGCCCTATCGGGTC
GGCCTCTGCCACTGCCTCGACTGCCGCAAGCACCACGGCGCGTTGTTCCACGCTTCGGCGATCTTCCCCGAG
GAGGCGGTGAGCATCGAGGGCGAGACCCGCGACTACGCCGGGCGTTTCTTCTGTCCGCAGTGCGGCTCGTCG
GTGTTCTCGCGCAGCGCCGACGAGATCGAGGTCAGCCTCGGCGCCCTCGACGCTCCCGACCAGTTCCAGCCC
ACCTACGAACTCTGGACCATCCGCCGCGAGGGCTGGTTGCCGGCGTTTCCGCTGGCACGGCACTATGAAAGG
GATCGCGAAGGCGACGGCCGTAGCGAAGAGTGA
Translation:
MDRFTGGCLCGKVRLVASGQPYRVGLCHCLDCRKHHGALFHASAIFPEEAVSIEGETRDYAGRFFCPQCGSS
VFSRSADEIEVSLGALDAPDQFQPTYELWTIRREGWLPAFPLARHYERDREGDGRSEE*
AnnotationID:4693GeneID:4687
AnnotatorUID: diggins
Modification Date/Time: 2005-04-05 07:07:52
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2722
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9375




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26515




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36263




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4687_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4687
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7056
                           PA2722_tr
                           translation of PA2722
                           130
                           97.69
                           99.99
                           0
                           707.0
     

     
     
186281
                           gb|AAG06110.1|AE004700_6
                           (AE004700) hypothetical protein PA2722 [Pseudomonas aeruginosa PAO1]
                           130
                           97.69
                           99.99
                           0
                           707.0
     

     
     
186282
                           emb|CAD44480.1|
                           (AJ297529) hypothetical protein [Pseudomonas stutzeri]
                           153
                           69.93
                           76.47
                           23
                           612.0
     

     
     
186285
                           emb|CAC46175.1|
                           (AL591787) HYPOTHETICAL PROTEIN [Sinorhizobium meliloti]
                           130
                           43.84
                           51.53
                           50
                           325.0
     

     
     
186283
                           dbj|BAB49075.1|
                           (AP002998) hypothetical protein [Mesorhizobium loti]
                           151
                           43.70
                           50.99
                           21
                           338.0
     

     






      

          
GC ORFID: 47689How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2722Glimmer Score: 

          
Start: 2449759Stop: 2450151

          
Length: 393


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2722 translation of PA2722Homolog Bit Score 276.0

          
Other Homologs:  t_PA2722 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCGATTCACCGGCGGCTGCCTCTGCGGCAAGGTCCGCCTGGTGGCGAGCGGCCAGCCCTATCGGGTC 
GGCCTCTGCCACTGCCTCGACTGCCGCAAGCACCACGGCGCGTTGTTCCACGCTTCGGCGATCTTCCCCGAG 
GAGGCGGTGAGCATCGAGGGCGAGACCCGCGACTACGCCGGGCGTTTCTTCTGTCCGCAGTGCGGCTCGTCG 
GTGTTCTCGCGCAGCGCCGACGAGATCGAGGTCAGCCTCGGCGCCCTCGACGCTCCCGACCAGTTCCAGCCC 
ACCTACGAACTCTGGACCATCCGCCGCGAGGGCTGGTTGCCGGCGTTTCCGCTGGCACGGCACTATGAAAGG 
GATCGCGAAGGCGACGGCCGTAGCGAAGAGTGA