ViewGene
Locus Name:
GeneID:
Location:

GeneID:4686
TrivialName: PA14_47070
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47070
PAO1 Ortholog Locus:PA1329
Sequence Length:432
Protein Length:143
Start: 4193007
Stop: 4192576
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04718.1|AE004562_5 (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 142/143 (99%), Positives = 142/143 (99%)
Sequence:
ATGAGGACGCCGGCCATGTCTACCCACCTGTCTCTGCAACATGCCCAACGCTGCATCGCGGCGGCCATTGCC
GAAGCGCAGCGGCAGCGCCTGGCGGTCTGCGTCGCGGTGGTCGACGCCCATGCCAACCTGCTGGCGTTCGTA
CGGATGGACGACAGCGTTCCCGGTGCCATCGACCTGGCCCAGCGCAAGGCGCGCAGCGCCGCGCTGTTCCGC
CTGCCCAGCGGCGAGCTGGGCCGACTCGCCGGGCCGGGCCAGCCGTTGTGGAGCATCGAGCAGAGCAACGGC
GGGCTGGCCTGCTTCGCCGGCGGCATGCCGCTGGGCGATGCCGGCGGTTCCTGCCTGGGTGGCGTCGGCGTC
TCCGGCGCCAGCGCGGCCCAGGACCAATCCATCGCCGAGGCCGCCGTGGCCATGGCAACAATCCAGAGGTAA
Translation:
MRTPAMSTHLSLQHAQRCIAAAIAEAQRQRLAVCVAVVDAHANLLAFVRMDDSVPGAIDLAQRKARSAALFR
LPSGELGRLAGPGQPLWSIEQSNGGLACFAGGMPLGDAGGSCLGGVGVSGASAAQDQSIAEAAVAMATIQR*
AnnotationID:4692GeneID:4686
AnnotatorUID: diggins
Modification Date/Time: 2005-05-26 14:02:08
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1329
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3193,pfam03928
Secondary Functional Category(ies):putative enzyme
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3193, GlcG, Uncharacterized protein, possibly involved in utilization 
of glycolate and propanediol 
CD-Length = 141 residues, 100.0% aligned
Score =  125 bits (316), Expect = 2e-30
Identities = 60/142 (42%), Positives = 79/142 (55%), Gaps = 2/142 (1%)

pfam03928, DUF336, This family contains uncharacterised sequences, 
including several GlcG proteins. 
The alignment contains many conserved motifs that are suggestive of 
cofactor binding and enzymatic activity.







   
Genomic Context:






   
Comment:


















    ReferenceID:9373




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26513




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:38049




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4686_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4686
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7055
                           PA1329_tr
                           translation of PA1329
                           143
                           99.30
                           99.30
                           0
                           707.0
     

     
     
186280
                           gb|AAG04718.1|AE004562_5
                           (AE004562) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           143
                           99.30
                           99.30
                           0
                           707.0
     

     






      

          
GC ORFID: 47688How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1329Glimmer Score: 

          
Start: 760902Stop: 761333

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA1329 translation of PA1329Homolog Bit Score 276.0

          
Other Homologs:  t_PA1329 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGGACGCCGGCCATGTCTACCCACCTGTCTCTGCAACATGCCCAACGCTGCATCGCGGCGGCCATTGCC 
GAAGCGCAGCGGCAGCGCCTGGCGGTCTGCGTCGCGGTGGTCGACGCCCATGCCAACCTGCTGGCGTTCGTA 
CGGATGGACGACAGCGTTCCCGGTGCCATCGACCTGGCCCAGCGCAAGGCGCGCAGCGCCGCGCTGTTCCGC 
CTGCCCAGCGGCGAGCTGGGCCGACTCGCCGGGCCGGGCCAGCCGTTGTGGAGCATCGAGCAGAGCAACGGC 
GGGCTGGCCTGCTTCGCCGGCGGCATGCCGCTGGGCGATGCCGGCGGTTCCTGCCTGGGTGGCGTCGGCGTC 
TCCGGCGCCAGCGCGGCCCAGGACCAATCCATCGCCGAGGCCGCCGTGGCCATGGCAACAATCCAGAGGTAA