ViewGene
Locus Name:
GeneID:
Location:

GeneID:4684
TrivialName: PA14_72920
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_72920
PAO1 Ortholog Locus:PA5527
Sequence Length:402
Protein Length:133
Start: 6492922
Stop: 6492521
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08912.1|AE004965_4 (AE004965) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 133/133 (100%), Positives = 133/133 (100%)
Sequence:
GTGGAAGACGTCATCGAAAAACTGCGTGAACTCAACGAACCGGTTCCGGTGCCCCTGGAACTGCCGGAAGAA
GAACTGCTGGTGGAAATCGAGGAGGAGCTGCTGATCGGCATTCCCGCCGAATTCCGCGAATTCCTCCTGCTG
GTCAGCGATGTGGTCTACGGCCGCCTGGAGCCGGTGACCGTGACCGATCCGCACTCGCACACCTACCTGCCC
GAAGTGGCGGCCACTGCCTGGGACCTGGGCGTTCCGCGCGAGCTGATCCCGCTTTGCGAGGACGACGGCAGC
TACTACTGCGTGGCGGAGGACGGCGAGGTGGTGCTCTGGGCCGATGGCGACCTCACCGATGAAAGCTGGGAT
TCGGTGTGGGTCTGGGCTCGCGACGTCTGGCTGGAGAGCTGA
Translation:
MEDVIEKLRELNEPVPVPLELPEEELLVEIEEELLIGIPAEFREFLLLVSDVVYGRLEPVTVTDPHSHTYLP
EVAATAWDLGVPRELIPLCEDDGSYYCVAEDGEVVLWADGDLTDESWDSVWVWARDVWLES*
AnnotationID:4690GeneID:4684
AnnotatorUID: diggins
Modification Date/Time: 2005-03-21 10:10:55
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5527
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:15156




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26509




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4684
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7053
                           PA5527_tr
                           translation of PA5527
                           133
                           99.99
                           99.99
                           0
                           709.0
     

     
     
186275
                           gb|AAG08912.1|AE004965_4
                           (AE004965) hypothetical protein PA5527 [Pseudomonas aeruginosa PAO1]
                           133
                           99.24
                           99.99
                           0
                           706.0
     

     
     
186276
                           gb|AAO58937.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           135
                           75.55
                           85.92
                           2
                           540.0
     

     
     
186277
                           gb|AAN70919.1|AE016736_2
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           135
                           71.85
                           84.44
                           2
                           528.0
     

     
     
186278
                           gb|AAN56823.1|AE015817_9
                           (AE015817) conserved hypothetical protein [Shewanella oneidensis MR-1]
                           135
                           52.59
                           73.33
                           2
                           427.0
     

     






      

          
GC ORFID: 47686How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5527Glimmer Score: 

          
Start: 5756611Stop: 5756210

          
Length: 402


          
Start Codon: GTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5527 translation of PA5527Homolog Bit Score 277.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene2920 (ORF: BLASTX 212.0), t_PA5527 (ORF: GLIMMER)

          
GC ORF Sequence

           
GTGGAAGACGTCATCGAAAAACTGCGTGAACTCAACGAACCGGTTCCGGTGCCCCTGGAACTGCCGGAAGAA 
GAACTGCTGGTGGAAATCGAGGAGGAGCTGCTGATCGGCATTCCCGCCGAATTCCGCGAATTCCTCCTGCTG 
GTCAGCGATGTGGTCTACGGCCGCCTGGAGCCGGTGACCGTGACCGATCCGCACTCGCACACCTACCTGCCC 
GAAGTGGCGGCCACTGCCTGGGACCTGGGCGTTCCGCGCGAGCTGATCCCGCTTTGCGAGGACGACGGCAGC 
TACTACTGCGTGGCGGAGGACGGCGAGGTGGTGCTCTGGGCCGATGGCGACCTCACCGATGAAAGCTGGGAT 
TCGGTGTGGGTCTGGGCTCGCGACGTCTGGCTGGAGAGCTGA