ViewGene
Locus Name:
GeneID:
Location:

GeneID:4683
TrivialName: PA14_40300
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_40300
PAO1 Ortholog Locus:PA1870
Sequence Length:426
Protein Length:141
Start: 3601180
Stop: 3600755
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05259.1|AE004613_4 (AE004613) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 137/141 (97%), Positives = 139/141 (98%)
Sequence:
ATGGCTACACGACGGAAAACCACACCCCAGGAAATCGACGACATTCAGGACCGCATGGGTTCGATACGCGAA
CTCGATTTCGACGAGCGCCGCCAGGCGCGCAAGTCACGGATCGGCGACGAGCGGCCCGAGGCCGAGGTGGAA
GCCGAGTTTTCCCCGCGGCGGGTACGCGAGGCGGGCCACGCCGGCGGGCAGCCGGACGAGGACGACGGTTAC
CAGGATAACGTCGGCATGGACGATCTGGCGCCGGAGACCCTGATCGATGAAAGCGGTGCCCGCTCGCCGGCC
GAGCGCGGTGGCGAATCGCCCGCGGACAAGCGCCTGAGGGTCGTGCATGGCAACGAGATCGGCGCTGGCCAC
GGCCTCGACGAAGCCGAGCTGGCACGTCGCGATCCGCTCGACGGCTCCTCCACCGAGGAACGCTGA
Translation:
MATRRKTTPQEIDDIQDRMGSIRELDFDERRQARKSRIGDERPEAEVEAEFSPRRVREAGHAGGQPDEDDGY
QDNVGMDDLAPETLIDESGARSPAERGGESPADKRLRVVHGNEIGAGHGLDEAELARRDPLDGSSTEER*
AnnotationID:4689GeneID:4683
AnnotatorUID: diggins
Modification Date/Time: 2005-03-02 07:07:34
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1870
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:9367




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26507




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4683
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7052
                           PA1870_tr
                           translation of PA1870
                           141
                           97.16
                           98.58
                           0
                           709.0
     

     
     
186272
                           gb|AAG05259.1|AE004613_4
                           (AE004613) hypothetical protein PA1870 [Pseudomonas aeruginosa PAO1]
                           141
                           97.16
                           98.58
                           0
                           709.0
     

     
     
186273
                           gb|AAN68868.1|AE016519_1
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           151
                           49.00
                           60.26
                           28
                           360.0
     

     
     
186274
                           gb|AAO54527.1|
                           (AE016859) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           145
                           47.58
                           60.00
                           14
                           293.0
     

     






      

          
GC ORFID: 47685How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1870Glimmer Score: 

          
Start: 1352730Stop: 1353155

          
Length: 426


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1870 translation of PA1870Homolog Bit Score 277.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene5157 (ORF: BLASTX 116.0), t_PA1870 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTACACGACGGAAAACCACACCCCAGGAAATCGACGACATTCAGGACCGCATGGGTTCGATACGCGAA 
CTCGATTTCGACGAGCGCCGCCAGGCGCGCAAGTCACGGATCGGCGACGAGCGGCCCGAGGCCGAGGTGGAA 
GCCGAGTTTTCCCCGCGGCGGGTACGCGAGGCGGGCCACGCCGGCGGGCAGCCGGACGAGGACGACGGTTAC 
CAGGATAACGTCGGCATGGACGATCTGGCGCCGGAGACCCTGATCGATGAAAGCGGTGCCCGCTCGCCGGCC 
GAGCGCGGTGGCGAATCGCCCGCGGACAAGCGCCTGAGGGTCGTGCATGGCAACGAGATCGGCGCTGGCCAC 
GGCCTCGACGAAGCCGAGCTGGCACGTCGCGATCCGCTCGACGGCTCCTCCACCGAGGAACGCTGA