ViewGene
Locus Name:
GeneID:
Location:

GeneID:4682
TrivialName: PA14_49400
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_49400
PAO1 Ortholog Locus:PA1160
Sequence Length:384
Protein Length:127
Start: 4390542
Stop: 4390925
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04549.1|AE004546_4 (AE004546) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 127/127 (100%), Positives = 127/127 (100%)
Sequence:
ATGCGCCAACCGGATATCGAGATCTACCTGAAAGACGCCGAGCACGCGGCCGTCGCCGCCTGGCTGGAACAG
GCGCTGGGGCCCTGCGGCCCATGGCAGGAGCACGGCCAGACCCTCAAGTGCACCGCCCGCGGCGAGCACGGC
GCGGTGCGCGTCACCTGGCTGCCGAAGGCGGTGGGCAAGTGGCACAGCCTGTTCTTGGAGAGCGACAGCACG
CCCTGGGACGACGACCTCGCCTGCGCCAGGGCCGCGCATGCCGCGCTCGGCGTGGAGATCCGCTGCGCGCCG
GGCGGCTGGGAGGAAAACCAGGGCGAAGAGGACGCCGACCGCTGGCTGCGGGTCGACGCCGGGGGCGTCGAG
GAAATTACCTGGCGCACCGCCTGA
Translation:
MRQPDIEIYLKDAEHAAVAAWLEQALGPCGPWQEHGQTLKCTARGEHGAVRVTWLPKAVGKWHSLFLESDST
PWDDDLACARAAHAALGVEIRCAPGGWEENQGEEDADRWLRVDAGGVEEITWRTA*
AnnotationID:4688GeneID:4682
AnnotatorUID: danlee
Modification Date/Time: 2004-09-14 16:04:33
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1160
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9365




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26505




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4682
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7051
                           PA1160_tr
                           translation of PA1160
                           127
                           99.99
                           99.99
                           0
                           708.0
     

     
     
186269
                           gb|AAG04549.1|AE004546_4
                           (AE004546) hypothetical protein PA1160 [Pseudomonas aeruginosa PAO1]
                           127
                           99.99
                           99.99
                           0
                           708.0
     

     
     
186270
                           gb|AAN67144.1|AE016343_4
                           (AE016779) conserved hypothetical protein [Pseudomonas putida KT2440]
                           129
                           68.99
                           79.06
                           6
                           495.0
     

     
     
186271
                           gb|AAO55041.1|
                           (AE016861) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           129
                           66.66
                           75.19
                           6
                           465.0
     

     






      

          
GC ORFID: 47684How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1160Glimmer Score: 

          
Start: 563366Stop: 562983

          
Length: 384


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1160 translation of PA1160Homolog Bit Score 277.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4809 (ORF: BLASTX 181.0), t_PA1160 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCGCCAACCGGATATCGAGATCTACCTGAAAGACGCCGAGCACGCGGCCGTCGCCGCCTGGCTGGAACAG 
GCGCTGGGGCCCTGCGGCCCATGGCAGGAGCACGGCCAGACCCTCAAGTGCACCGCCCGCGGCGAGCACGGC 
GCGGTGCGCGTCACCTGGCTGCCGAAGGCGGTGGGCAAGTGGCACAGCCTGTTCTTGGAGAGCGACAGCACG 
CCCTGGGACGACGACCTCGCCTGCGCCAGGGCCGCGCATGCCGCGCTCGGCGTGGAGATCCGCTGCGCGCCG 
GGCGGCTGGGAGGAAAACCAGGGCGAAGAGGACGCCGACCGCTGGCTGCGGGTCGACGCCGGGGGCGTCGAG 
GAAATTACCTGGCGCACCGCCTGA