ViewGene
Locus Name:
GeneID:
Location:

GeneID:4681
TrivialName: PA14_52480
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52480
PAO1 Ortholog Locus:PA0911
Sequence Length:486
Protein Length:161
Start: 4656891
Stop: 4656406
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04300.1|AE004525_8 (AE004525) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 149/161 (92%), Positives = 149/161 (92%), Gaps = 11/161 (6%)
Sequence:
ATGGTCATGTTGATCAGTCGTCGCGTCGGCATCGTTCGCCTGGATGCGGTGATTTCCGAAAACCTCGCGCAG
GCTGCCGGGAGTGTCGTCGAGACGGGGCAAGAGGCTGCCGTCAGCGTGCGCGGCGACCAGCTCATCACCATC
GTCGGCAGCATTGTCGACCATGCGCCCGCTGGCGAGCCGTTGCCCTCCTTGCTGCCGATGGAGGGAGGCAGC
CGCGCGTTGAACGAGTGCCGTGTGCGCAAGGGCATCGCTGCCTTGACTTCACTGCAAGGCGCTTCCGAAACG
GTGGACGTGCAGACGGGATTCCACCTGTATCGCGGTCTGTTCATCACGCGCGTTGTTGCCCGGCGAACCGCA
GAAAGAGGATTGAGCCTGACCATAACCGCCAGCCAGAGGCGTGCGCGGCGGGCAGGCGGTAGGCTGCTGAAG
ACTGTCGTCCGTCTTTTCCATGCAGGCAGGGCGACACCCTGCCCGGCACGCTAA
Translation:
MVMLISRRVGIVRLDAVISENLAQAAGSVVETGQEAAVSVRGDQLITIVGSIVDHAPAGEPLPSLLPMEGGS
RALNECRVRKGIAALTSLQGASETVDVQTGFHLYRGLFITRVVARRTAERGLSLTITASQRRARRAGGRLLK
TVVRLFHAGRATPCPAR*
AnnotationID:4687GeneID:4681
AnnotatorUID: danlee
Modification Date/Time: 2004-05-06 13:01:26
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0911
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:
GeneID=4681 has an 11 amino acid insertion NOT present in PA0911, resulting in 
the lower-than-expected identity (92.54%) between these two ORFs.


















    ReferenceID:9363




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26503




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4681
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7050
                           PA0911_tr
                           translation of PA0911
                           161
                           92.54
                           92.54
                           11
                           716.0
     

     
     
186268
                           gb|AAG04300.1|AE004525_8
                           (AE004525) hypothetical protein PA0911 [Pseudomonas aeruginosa PAO1]
                           161
                           92.54
                           92.54
                           11
                           716.0
     

     






      

          
GC ORFID: 47683How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0911Glimmer Score: 

          
Start: 297016Stop: 297501

          
Length: 486


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0911 translation of PA0911Homolog Bit Score 277.0

          
Other Homologs:  t_PA0911 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGTCATGTTGATCAGTCGTCGCGTCGGCATCGTTCGCCTGGATGCGGTGATTTCCGAAAACCTCGCGCAG 
GCTGCCGGGAGTGTCGTCGAGACGGGGCAAGAGGCTGCCGTCAGCGTGCGCGGCGACCAGCTCATCACCATC 
GTCGGCAGCATTGTCGACCATGCGCCCGCTGGCGAGCCGTTGCCCTCCTTGCTGCCGATGGAGGGAGGCAGC 
CGCGCGTTGAACGAGTGCCGTGTGCGCAAGGGCATCGCTGCCTTGACTTCACTGCAAGGCGCTTCCGAAACG 
GTGGACGTGCAGACGGGATTCCACCTGTATCGCGGTCTGTTCATCACGCGCGTTGTTGCCCGGCGAACCGCA 
GAAAGAGGATTGAGCCTGACCATAACCGCCAGCCAGAGGCGTGCGCGGCGGGCAGGCGGTAGGCTGCTGAAG 
ACTGTCGTCCGTCTTTTCCATGCAGGCAGGGCGACACCCTGCCCGGCACGCTAA