ViewGene
Locus Name:
GeneID:
Location:

GeneID:4680
TrivialName: PA14_08720
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_08720
PAO1 Ortholog Locus:PA4274
Sequence Length:432
Protein Length:143
Start: 743709
Stop: 744140
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07662.1|AE004843_4 (AE004843) 50S ribosomal protein L11 [Pseudomonas aeruginosa PAO1]
Identities = 143/143 (100%), Positives = 143/143 (100%)
Sequence:
ATGGCTAAGAAAATCCAGGCTTATATCAAGCTGCAAGTAAAGGCCGGTCAGGCCAACCCGTCGCCGCCGGTC
GGCCCTGCCCTGGGTCAGCACGGCGTGAACATCATGGAATTCTGCAAGGCGTTCAACGCCAAGACCCAAGGC
CAAGAGCCGGGCCTGCCGACTCCTGTGATCATCACCGTTTACAGCGACCGTAGCTTCACCTTCGAAACCAAG
AGCACCCCGGCTGCCGTCCTGCTGAAAAAAGCAGCTGGCATCACCAGCGGCTCCGCTCGTCCGAACTCCCAG
AAAGTCGGCACCGTTACCCGTGCCCAGCTGGAAGAGATCGCCAAGACCAAGCAGGCTGACCTGACCGCTGCT
GATCTGGACGCTGCTGTACGTACCATCGCTGGCTCCGCGCGCAGCATGGGCCTGAACGTGGAGGGTGTGTAA
Translation:
MAKKIQAYIKLQVKAGQANPSPPVGPALGQHGVNIMEFCKAFNAKTQGQEPGLPTPVIITVYSDRSFTFETK
STPAAVLLKKAAGITSGSARPNSQKVGTVTRAQLEEIAKTKQADLTAADLDAAVRTIAGSARSMGLNVEGV*
AnnotationID:4686GeneID:4680
AnnotatorUID: diggins
Modification Date/Time: 2005-04-03 17:05:09
Gene Name:rplK
Confidence Code:2
GeneProduct:50S ribosomal protein L11
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(26) Translation, post-translational modification, degradation
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:smart00649,cd00349,pfam03946
Secondary Functional Category(ies):translation, ribosomal structure and biogenesis
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66073.1|AE016236_7 (AE016775) ribosomal protein L11 [Pseudomonas putida KT2440]
          Length = 143

 Score =  265 bits (677), Expect = 5e-71
 Identities = 135/143 (94%), Positives = 140/143 (97%)

>gb|AAO54157.1| (AE016858) ribosomal protein L11 [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 143

 Score =  256 bits (654), Expect = 2e-68
 Identities = 130/143 (90%), Positives = 137/143 (95%)

>gb|AAM35844.1| (AE011726) 50S ribosomal protein L11 [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 142

 Score =  231 bits (589), Expect = 9e-61
 Identities = 117/142 (82%), Positives = 128/142 (90%)






 
Structural Features:
smart00649, RL11, Ribosomal protein L11/L12
CD-Length = 132 residues, 100.0% aligned
Score =  184 bits (468), Expect = 4e-48
Identities = 81/133 (60%), Positives = 102/133 (76%), Gaps = 1/133 (0%)

cd00349, Ribosomal_L11, Ribosomal protein L11.
CD-Length = 133 residues, 100.0% aligned
Score =  162 bits (412), Expect = 1e-41
Identities = 85/134 (63%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal domain.
CD-Length = 59 residues, 100.0% aligned
Score = 81.8 bits (202), Expect = 3e-17
Identities = 39/60 (65%), Positives = 47/60 (78%), Gaps = 1/60 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9361




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26501




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36547




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4680_cdd.html


    		




 
URL:

















    ReferenceID:36779




  
Author/Investigator(s):
        Post LE, Strycharz GD, Nomura M, Lewis H, Dennis PP.





  
Title:
        Nucleotide sequence of the ribosomal protein gene cluster adjacent to the gene for RNA polymerase subunit beta in Escherichia coli.




  
PubMed:
        377281


MedLine:
        




    
Source:
Proc Natl Acad Sci U S A. 1979 Apr;76(4):1697-701.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=377281

















    ReferenceID:36785




  
Author/Investigator(s):
        Choli T.





  
Title:
        Structural properties of ribosomal protein L11 from Escherichia coli.




  
PubMed:
        2483975


MedLine:
        




    
Source:
Biochem Int. 1989 Dec;19(6):1323-38.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=90253442&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4680
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7049
                           PA4274_tr
                           translation of PA4274
                           143
                           99.99
                           99.99
                           0
                           711.0
     

     
     
186099
                           gb|AAG07662.1|AE004843_4
                           (AE004843) 50S ribosomal protein L11 [Pseudomonas aeruginosa PAO1]
                           143
                           99.99
                           99.99
                           0
                           711.0
     

     
     
186100
                           gb|AAN66073.1|AE016236_7
                           (AE016775) ribosomal protein L11 [Pseudomonas putida KT2440]
                           143
                           94.40
                           97.90
                           0
                           677.0
     

     
     
186101
                           gb|AAO54157.1|
                           (AE016858) ribosomal protein L11 [Pseudomonas syringae pv. tomato str. DC3000]
                           143
                           90.90
                           95.80
                           0
                           654.0
     

     
     
186102
                           gb|AAM35844.1|
                           (AE011726) 50S ribosomal protein L11 [Xanthomonas axonopodis pv. citri str. 306]
                           143
                           81.81
                           89.51
                           1
                           589.0
     

     






      

          
GC ORFID: 47682How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4274Glimmer Score: 

          
Start: 4210230Stop: 4209799

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA4274 translation of PA4274Homolog Bit Score 278.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene81 (ORF: BLASTX 256.0), t_PA4274 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTAAGAAAATCCAGGCTTATATCAAGCTGCAAGTAAAGGCCGGTCAGGCCAACCCGTCGCCGCCGGTC 
GGCCCTGCCCTGGGTCAGCACGGCGTGAACATCATGGAATTCTGCAAGGCGTTCAACGCCAAGACCCAAGGC 
CAAGAGCCGGGCCTGCCGACTCCTGTGATCATCACCGTTTACAGCGACCGTAGCTTCACCTTCGAAACCAAG 
AGCACCCCGGCTGCCGTCCTGCTGAAAAAAGCAGCTGGCATCACCAGCGGCTCCGCTCGTCCGAACTCCCAG 
AAAGTCGGCACCGTTACCCGTGCCCAGCTGGAAGAGATCGCCAAGACCAAGCAGGCTGACCTGACCGCTGCT 
GATCTGGACGCTGCTGTACGTACCATCGCTGGCTCCGCGCGCAGCATGGGCCTGAACGTGGAGGGTGTGTAA