ViewGene
Locus Name:
GeneID:
Location:

GeneID:468
TrivialName: PA14_19810
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_19810
PAO1 Ortholog Locus:PA3422
Sequence Length:1758
Protein Length:585
Start: 1706618
Stop: 1708375
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06810.1|AE004763_5 (AE004763) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 585/585 (100%), Positives = 585/585 (100%)
Sequence:
ATGACAACAACAAAAAGGCGCGGAATCTTCCCTCTGCACGCACTCGCTGCGGCCACAGCCCTGGGTTGCGCC
ACCCAGGCCTCGGCCGTGTCATTCAACATCGGGGAGATCGAAGGGCAATTCGACTCGTCGCTGTCGGTGGGG
GCCAGCTGGTCCATGCGTTCCGCCGACAAGGACTACATCGGCACCCGCAACGGCGGCCACGCCTCGTCGCAG
ACCTCCGACGACGGCCGGCTCAACTTCAAGAAGGGTGAAACCTTCTCGAAGATCTTCAAGGGCATCCACGAT
CTCGAACTCAAGTACGGCGACACCGGCGCGTTCTTCCGTGGCAAGTACTGGTACGACTTCGAGCTGAAGGAC
GAACACCGCCTGCTCTACGACATCGACGACCACAACCGCAAGGAGGGCGCCAAGTCCTCCGGGGCGCAGCTG
CTCGATGCCTTCCTCTACCACAACTACAGCATCGGCGACCTGCCCGGCAGCGTGCGGGTCGGCAAGCAGGTG
GTGAGCTGGGGCGAGAGCACGTTCATCCAGAACTCGATCAACAGCATCAACCCGATGGACGTCGCCGCGTTC
CGCCGGCCCGGCGCGGAGATCAAGGAAGGCCTGATCCCGGTGAACATGCTCTACCTGTCCCAGGGCATCAGC
GACGCGCTGACCGTCGAAGGCTTCTACCAACTGGAATGGGACCAGACGGTGATCGACAACTGCGGCACCTTC
TTCTCCACCACCGACGTGGTCGCCGATGGCTGCGAGCGGATGGTCTACGCCGGCAGCGACTTCGACCCGAAC
CCGGCCAACGGCTACCGCTACCTGCCGCGCGCCGGCGATCGCGATGCCCGCGACAGCGGCCAGTGGGGCCTG
GCCCTGCGCTGGTACGCGGCGGAGCTGAACGACACCGAGTTCGGCCTGTACGCGATGAACTACCACAGTCGC
AACCCGTACTACAGCGTGATCGCCGGCAACGGCCTGGCCACCTCCGACCCGGTCACCGGGCGCTCCACCGGC
TATTACTTCATCGACTATCCCGAGGACATCCGCCTCTACGGCCTGAGCTTCCAGACCAACATCGGCAGCACC
TCGGTGGCCGGCGAGCTGAGCTACCGGCCGAACATGCCGCTACAAATCAACAGCACCGACATGTCGATCGCC
GCGATCTACCCGACCACCCTGTTCGGTAACCCGATCTACGACAGCGGCTTCGCCACCCCGCGCGCCGGCGAG
GTGATCAACGGCTACGTGCGCAAGCCGGTGACCCAGGCACAGGTGACCGTCACCCAGTTCTTCGACCGGGTA
CTGGCGGCCGACCGCCTGACCGTGGTCGGCGAAGTCGGCTACAACCACCTCAGCGGGGTCGACGGCGACGAC
CTGCGCTACGGCCGCGACGCCATCTACGGCATCGGCGAACTGCCGAACAACGCCTTGTGCACCGGCGCGCTC
AACGTGGCCAACCCGCAGGAGTGCAACAGCCACGGTTTCTACACCCGCAACTCGTGGGGCTACCGCCTGCGC
GGGATCCTCGAATATCCCAACGTGTTCGCCGGGGTCAACCTGAAGCCGAACCTGGCCTGGTCGCACGACGTC
GAGGGCTACGGGCCGAACTTCAGCGAGGGCGCCAAGGCCGTCAGCGTCGGCCTCGATGCCGACTACCAGAAC
ACCTATACCGCCAGCATCAGCTACACCGACTTCTTCGGCGGCAACTACAACCCGATCAACGACCGCGACTTC
CTCGCGGTGAGCTTCGGGGTGAACTTCTGA
Translation:
MTTTKRRGIFPLHALAAATALGCATQASAVSFNIGEIEGQFDSSLSVGASWSMRSADKDYIGTRNGGHASSQ
TSDDGRLNFKKGETFSKIFKGIHDLELKYGDTGAFFRGKYWYDFELKDEHRLLYDIDDHNRKEGAKSSGAQL
LDAFLYHNYSIGDLPGSVRVGKQVVSWGESTFIQNSINSINPMDVAAFRRPGAEIKEGLIPVNMLYLSQGIS
DALTVEGFYQLEWDQTVIDNCGTFFSTTDVVADGCERMVYAGSDFDPNPANGYRYLPRAGDRDARDSGQWGL
ALRWYAAELNDTEFGLYAMNYHSRNPYYSVIAGNGLATSDPVTGRSTGYYFIDYPEDIRLYGLSFQTNIGST
SVAGELSYRPNMPLQINSTDMSIAAIYPTTLFGNPIYDSGFATPRAGEVINGYVRKPVTQAQVTVTQFFDRV
LAADRLTVVGEVGYNHLSGVDGDDLRYGRDAIYGIGELPNNALCTGALNVANPQECNSHGFYTRNSWGYRLR
GILEYPNVFAGVNLKPNLAWSHDVEGYGPNFSEGAKAVSVGLDADYQNTYTASISYTDFFGGNYNPINDRDF
LAVSFGVNF*
AnnotationID:477GeneID:468
AnnotatorUID: diggins
Modification Date/Time: 2005-04-18 17:05:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3422
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:939




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:18081




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32144




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:468_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:468
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
804
                           PA3422_tr
                           translation of PA3422
                           585
                           99.99
                           99.99
                           0
                           3114.0
     

     
     
34266
                           gb|AAG06810.1|AE004763_5
                           (AE004763) hypothetical protein PA3422 [Pseudomonas aeruginosa PAO1]
                           585
                           99.99
                           99.99
                           0
                           3114.0
     

     
     
34268
                           gb|AAN66390.1|AE016266_12
                           (AE016776) conserved hypothetical protein [Pseudomonas putida KT2440]
                           635
                           57.00
                           69.29
                           57
                           1783.0
     

     
     
805
                           PA3923_tr
                           translation of PA3923
                           648
                           55.86
                           69.75
                           70
                           1804.0
     

     
     
34267
                           gb|AAG07310.1|AE004810_2
                           (AE004810) hypothetical protein PA3923 [Pseudomonas aeruginosa PAO1]
                           648
                           55.86
                           69.75
                           70
                           1804.0
     

     






      

          
GC ORFID: 43470How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3422Glimmer Score: 

          
Start: 3247314Stop: 3245557

          
Length: 1758


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3422 translation of PA3422Homolog Bit Score 1204.0

          
Other Homologs:  t_PA3923 (ORF: BLASTX 677.0), psyr_15may02_Scaffold3_revised_gene4327 (ORF: BLASTX 667.0), t_PA3422 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACAACAACAAAAAGGCGCGGAATCTTCCCTCTGCACGCACTCGCTGCGGCCACAGCCCTGGGTTGCGCC 
ACCCAGGCCTCGGCCGTGTCATTCAACATCGGGGAGATCGAAGGGCAATTCGACTCGTCGCTGTCGGTGGGG 
GCCAGCTGGTCCATGCGTTCCGCCGACAAGGACTACATCGGCACCCGCAACGGCGGCCACGCCTCGTCGCAG 
ACCTCCGACGACGGCCGGCTCAACTTCAAGAAGGGTGAAACCTTCTCGAAGATCTTCAAGGGCATCCACGAT 
CTCGAACTCAAGTACGGCGACACCGGCGCGTTCTTCCGTGGCAAGTACTGGTACGACTTCGAGCTGAAGGAC 
GAACACCGCCTGCTCTACGACATCGACGACCACAACCGCAAGGAGGGCGCCAAGTCCTCCGGGGCGCAGCTG 
CTCGATGCCTTCCTCTACCACAACTACAGCATCGGCGACCTGCCCGGCAGCGTGCGGGTCGGCAAGCAGGTG 
GTGAGCTGGGGCGAGAGCACGTTCATCCAGAACTCGATCAACAGCATCAACCCGATGGACGTCGCCGCGTTC 
CGCCGGCCCGGCGCGGAGATCAAGGAAGGCCTGATCCCGGTGAACATGCTCTACCTGTCCCAGGGCATCAGC 
GACGCGCTGACCGTCGAAGGCTTCTACCAACTGGAATGGGACCAGACGGTGATCGACAACTGCGGCACCTTC 
TTCTCCACCACCGACGTGGTCGCCGATGGCTGCGAGCGGATGGTCTACGCCGGCAGCGACTTCGACCCGAAC 
CCGGCCAACGGCTACCGCTACCTGCCGCGCGCCGGCGATCGCGATGCCCGCGACAGCGGCCAGTGGGGCCTG 
GCCCTGCGCTGGTACGCGGCGGAGCTGAACGACACCGAGTTCGGCCTGTACGCGATGAACTACCACAGTCGC 
AACCCGTACTACAGCGTGATCGCCGGCAACGGCCTGGCCACCTCCGACCCGGTCACCGGGCGCTCCACCGGC 
TATTACTTCATCGACTATCCCGAGGACATCCGCCTCTACGGCCTGAGCTTCCAGACCAACATCGGCAGCACC 
TCGGTGGCCGGCGAGCTGAGCTACCGGCCGAACATGCCGCTACAAATCAACAGCACCGACATGTCGATCGCC 
GCGATCTACCCGACCACCCTGTTCGGTAACCCGATCTACGACAGCGGCTTCGCCACCCCGCGCGCCGGCGAG 
GTGATCAACGGCTACGTGCGCAAGCCGGTGACCCAGGCACAGGTGACCGTCACCCAGTTCTTCGACCGGGTA 
CTGGCGGCCGACCGCCTGACCGTGGTCGGCGAAGTCGGCTACAACCACCTCAGCGGGGTCGACGGCGACGAC 
CTGCGCTACGGCCGCGACGCCATCTACGGCATCGGCGAACTGCCGAACAACGCCTTGTGCACCGGCGCGCTC 
AACGTGGCCAACCCGCAGGAGTGCAACAGCCACGGTTTCTACACCCGCAACTCGTGGGGCTACCGCCTGCGC 
GGGATCCTCGAATATCCCAACGTGTTCGCCGGGGTCAACCTGAAGCCGAACCTGGCCTGGTCGCACGACGTC 
GAGGGCTACGGGCCGAACTTCAGCGAGGGCGCCAAGGCCGTCAGCGTCGGCCTCGATGCCGACTACCAGAAC 
ACCTATACCGCCAGCATCAGCTACACCGACTTCTTCGGCGGCAACTACAACCCGATCAACGACCGCGACTTC 
CTCGCGGTGAGCTTCGGGGTGAACTTCTGA