ViewGene
Locus Name:
GeneID:
Location:

GeneID:4678
TrivialName: PA14_12470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12470
PAO1 Ortholog Locus:PA3971
Sequence Length:432
Protein Length:143
Start: 1074127
Stop: 1074558
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07358.1|AE004815_2 (AE004815) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 141/143 (98%), Positives = 142/143 (99%)
Sequence:
ATGCAAGCGCATCCGCGCTACCGGGAGCTGGTCGAGCAGGGCTTCGCCGCGGCCAGTTTCGTCGGCGACCTC
GGCATCCGTCCGCTGGACTGCGGGCCGGGTTGGGTCGAAGCGGGGCTGGACATCCTGCCCCGCCACGCCCAG
CAGAACGGCTTCATCCATGCCGGGGTCCAGGCGACCCTGGCCGACCATGCCGCCGGGGCCGCCGCCGCGACC
CTGGTGGAGGAGGGGCAGACGGTGCTGAGCCTGGAGTTCAAGCTCAACCTGTTGCGCCCGGCGCTTTGCCAG
CGCCTGTTGTGTCGCGCCGAGGTGCTCAAGGCCGGGCGCCAGGTGACGGTGGTCGAGGCCGAGGTGTTCGCC
GAGCGGGACGGTCGGCGGCGCCTGTTCAGCAAGGCCACCGTGACCATGGCGGTGGTGGCGCTGGCCGAATGA
Translation:
MQAHPRYRELVEQGFAAASFVGDLGIRPLDCGPGWVEAGLDILPRHAQQNGFIHAGVQATLADHAAGAAAAT
LVEEGQTVLSLEFKLNLLRPALCQRLLCRAEVLKAGRQVTVVEAEVFAERDGRRRLFSKATVTMAVVALAE*
AnnotationID:4684GeneID:4678
AnnotatorUID: urbach
Modification Date/Time: 2004-05-24 12:12:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA3971
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2050, KOG3328
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
gnl|CDD|11758 COG2050, PaaI, Uncharacterized protein, possibly involved in aromatic
compounds catabolism [Secondary metabolites biosynthesis, transport, and catabolism]
Length = 141
Score = 98.6 bits (245), Expect = 5e-22
Identities = 49/139 (35%), Positives = 67/139 (48%), Gaps = 2/139 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:9357




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26497




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:4678
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7047
                           PA3971_tr
                           translation of PA3971
                           143
                           98.60
                           99.30
                           0
                           712.0
     

     
     
186097
                           gb|AAG07358.1|AE004815_2
                           (AE004815) hypothetical protein PA3971 [Pseudomonas aeruginosa PAO1]
                           143
                           98.60
                           99.30
                           0
                           712.0
     

     






      

          
GC ORFID: 47680How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3971Glimmer Score: 

          
Start: 3879811Stop: 3879380

          
Length: 432


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3971 translation of PA3971Homolog Bit Score 278.0

          
Other Homologs:  t_PA3971 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCAAGCGCATCCGCGCTACCGGGAGCTGGTCGAGCAGGGCTTCGCCGCGGCCAGTTTCGTCGGCGACCTC 
GGCATCCGTCCGCTGGACTGCGGGCCGGGTTGGGTCGAAGCGGGGCTGGACATCCTGCCCCGCCACGCCCAG 
CAGAACGGCTTCATCCATGCCGGGGTCCAGGCGACCCTGGCCGACCATGCCGCCGGGGCCGCCGCCGCGACC 
CTGGTGGAGGAGGGGCAGACGGTGCTGAGCCTGGAGTTCAAGCTCAACCTGTTGCGCCCGGCGCTTTGCCAG 
CGCCTGTTGTGTCGCGCCGAGGTGCTCAAGGCCGGGCGCCAGGTGACGGTGGTCGAGGCCGAGGTGTTCGCC 
GAGCGGGACGGTCGGCGGCGCCTGTTCAGCAAGGCCACCGTGACCATGGCGGTGGTGGCGCTGGCCGAATGA