ViewGene

Locus Name:
GeneID:
Location:

GeneID:4676
TrivialName: PA14_29150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_29150
PAO1 Ortholog Locus:PA2706
Sequence Length:396
Protein Length:131
Start: 2521309
Stop: 2521704
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06094.1|AE004698_10 (AE004698) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 130/131 (99%), Positives = 130/131 (99%)
Sequence:
ATGCTCAGCGGAAGTTGCCTGTGCGGCGCGGTACGTTACGAGATCGACGCGCCCATCGAATCGGCCAGCCAT
TGTCATTGCAGCCAGTGCCGCAAGGCCCACGGCGCGGCGTTCGCCACCTACGGCAAGGTGCGCCGCGAGGCG
TTCCGCTATGTCGCCGGGGCGGACGCGGTGGCCGAATACCACTCGTCGCCAGGCGTCACCCGTACCTTCTGC
CGCCACTGCGGATCGAACCTGCAGTGGCTTGGCGGCAACGAGGACCCGACGTACACCTCTATCGCCCTCGGC
ACCCTCGACTCGCCGCTGCCATCGGTAGCGCAGCGGCACATCTACGTGGGTTCGAAAGCCGACTGGTACGTC
ATCGCCGACGACCTGCCGCAGGAACACCAATACTGA
Translation:
MLSGSCLCGAVRYEIDAPIESASHCHCSQCRKAHGAAFATYGKVRREAFRYVAGADAVAEYHSSPGVTRTFC
RHCGSNLQWLGGNEDPTYTSIALGTLDSPLPSVAQRHIYVGSKADWYVIADDLPQEHQY*
AnnotationID:4682GeneID:4676
AnnotatorUID: diggins
Modification Date/Time: 2005-03-07 20:08:46
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2706
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Comment:
ReferenceID:9353
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:26493
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:36319
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:4676_cdd.html
URL:
Homologs By Global Alignment
Gene ID:4676

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
7043 PA2706_tr translation of PA2706 131 99.23 99.23 0 712.0
186084 gb|AAG06094.1|AE004698_10 (AE004698) hypothetical protein PA2706 [Pseudomonas aeruginosa PAO1] 131 99.23 99.23 0 712.0
7044 PA4177_tr translation of PA4177 135 47.40 58.51 6 332.0
186085 gb|AAG07564.1|AE004834_4 (AE004834) hypothetical protein PA4177 [Pseudomonas aeruginosa PAO1] 135 47.40 58.51 6 332.0
186086 gb|AAN67787.1|AE016410_3 (AE016782) conserved hypothetical protein [Pseudomonas putida KT2440] 135 45.18 57.77 9 310.0
GC ORFID: 47678How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA2706Glimmer Score:
Start: 2432617Stop: 2432222
Length: 396
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA2706 translation of PA2706Homolog Bit Score 278.0
Other Homologs: t_PA4177 (ORF: BLASTX 134.0), t_PA5465 (ORF: BLASTX 102.0), t_PA2706 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCAGCGGAAGTTGCCTGTGCGGCGCGGTACGTTACGAGATCGACGCGCCCATCGAATCGGCCAGCCAT
TGTCATTGCAGCCAGTGCCGCAAGGCCCACGGCGCGGCGTTCGCCACCTACGGCAAGGTGCGCCGCGAGGCG
TTCCGCTATGTCGCCGGGGCGGACGCGGTGGCCGAATACCACTCGTCGCCAGGCGTCACCCGTACCTTCTGC
CGCCACTGCGGATCGAACCTGCAGTGGCTTGGCGGCAACGAGGACCCGACGTACACCTCTATCGCCCTCGGC
ACCCTCGACTCGCCGCTGCCATCGGTAGCGCAGCGGCACATCTACGTGGGTTCGAAAGCCGACTGGTACGTC
ATCGCCGACGACCTGCCGCAGGAACACCAATACTGA