ViewGene
Locus Name:
GeneID:
Location:

GeneID:4675
TrivialName: PA14_42360
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42360
PAO1 Ortholog Locus:PA1715
Sequence Length:423
Protein Length:140
Start: 3775728
Stop: 3775306
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05104.1|AE004598_3 (AE004598) type III export apparatus protein [Pseudomonas aeruginosa PAO1]
Identities = 139/140 (99%), Positives = 139/140 (99%)
Sequence:
ATGGATCATCTGTTGAGCGGATTGGCCACTCGCCTGGGCCAAGGGCCCTTTGTTGCCGATCGGACGGGTTCG
TACCACCTGCGCATCGACGGACAGAGCGTCCTGTTGCTGCGCCAGGGCGACGACCTGCTGCTGGAAAGCCCG
CTGGAGCACGCCCCCCTGGACCCGCAGCGCGACCAGCAGGGGTTGCTGCGGGCGCTGTTGTCGCGGGTCGCC
AGTTGGAGCCGGCGCTATCCCCAGGCCATCGTCCTGGACGCGGACGGGCGCCTGCTGTTGCAGGCGCGGCTG
GGCCTCGACGGCCTCGATCCCGAGCGACTCGAACGGGCCCTGGCCGCCCAGGTGGGGCTGCTCGAGGCGCTG
GCGCCGGAGCTGGAGCCGCTGCCCCGCGGGTTGCCGCCGCAGGTTCCGGTGTGGCGTCCCTGA
Translation:
MDHLLSGLATRLGQGPFVADRTGSYHLRIDGQSVLLLRQGDDLLLESPLEHAPLDPQRDQQGLLRALLSRVA
SWSRRYPQAIVLDADGRLLLQARLGLDGLDPERLERALAAQVGLLEALAPELEPLPRGLPPQVPVWRP*
AnnotationID:4681GeneID:4675
AnnotatorUID: diggins
Modification Date/Time: 2004-12-17 10:10:32
Gene Name:pscB
Confidence Code:1
GeneProduct:type III export apparatus protein
Cell Localization:()
Synonyms:yscB
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN37552.1| (AY150843) YscB [Yersinia enterocolitica]
          Length = 137

 Score =  101 bits (252), Expect = 6e-22
 Identities = 56/128 (43%), Positives = 82/128 (64%), Gaps = 3/128 (2%)








 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:9351




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:26491




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36515




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:4675_cdd.html


    		




 
URL:

















    ReferenceID:36580




  
Author/Investigator(s):
        Yahr TL, Goranson J, Frank DW.





  
Title:
        Exoenzyme S of Pseudomonas aeruginosa is secreted by a type III pathway.




  
PubMed:
        8971719


MedLine:
        




    
Source:
Mol Microbiol. 1996 Dec;22(5):991-1003.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=97126825&dopt=Abstract









           
Homologs By Global Alignment 

           

       



     
Gene ID:4675
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
7042
                           PA1715_tr
                           translation of PA1715
                           140
                           99.28
                           99.28
                           0
                           710.0
     

     
     
186076
                           gb|AAG05104.1|AE004598_3
                           (AE004598) type III export apparatus protein [Pseudomonas aeruginosa PAO1]
                           140
                           99.28
                           99.28
                           0
                           710.0
     

     
     
186077
                           gb|AAC44773.1|
                           (U56077) PscB [Pseudomonas aeruginosa]
                           140
                           98.57
                           98.57
                           0
                           703.0
     

     
     
186078
                           gb|AAO18034.1|
                           (AY144116) LscB [Photorhabdus luminescens]
                           145
                           46.20
                           60.00
                           10
                           279.0
     

     
     
186079
                           emb|CAE16149.1|
                           (BX571871) Type III secretion component protein SctB [Photorhabdus luminescens subsp. laumondii TTO1]
                           145
                           44.13
                           58.62
                           10
                           276.0
     

     






      

          
GC ORFID: 47677How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1715Glimmer Score: 

          
Start: 1178181Stop: 1178603

          
Length: 423


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1715 translation of PA1715Homolog Bit Score 278.0

          
Other Homologs:  t_PA1715 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGATCATCTGTTGAGCGGATTGGCCACTCGCCTGGGCCAAGGGCCCTTTGTTGCCGATCGGACGGGTTCG 
TACCACCTGCGCATCGACGGACAGAGCGTCCTGTTGCTGCGCCAGGGCGACGACCTGCTGCTGGAAAGCCCG 
CTGGAGCACGCCCCCCTGGACCCGCAGCGCGACCAGCAGGGGTTGCTGCGGGCGCTGTTGTCGCGGGTCGCC 
AGTTGGAGCCGGCGCTATCCCCAGGCCATCGTCCTGGACGCGGACGGGCGCCTGCTGTTGCAGGCGCGGCTG 
GGCCTCGACGGCCTCGATCCCGAGCGACTCGAACGGGCCCTGGCCGCCCAGGTGGGGCTGCTCGAGGCGCTG 
GCGCCGGAGCTGGAGCCGCTGCCCCGCGGGTTGCCGCCGCAGGTTCCGGTGTGGCGTCCCTGA